PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100208220081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 26677.1 Da PI: 10.2864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.8e-06 | 210 | 232 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F ++nL+ H+ + H Ote100208220081|100208220081 210 SCPDCGEIFMKPENLELHQAVrH 232 8******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 208 | 228 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.367 | 209 | 235 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 209 | 232 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAKSRNPRKP TREKKHQHSQ ENDEKPHSWP SVRSLFTCKY LQVQPQQHSV QXXXXXXXXX 60 QKLKQPQQKK PTKETKKKDQ TSDETNKMCK KMKCXXXXXX XSNTKVMQKP EIIPPEENQK 120 LSKRALMAST SSESEASGRS VKTGVTLSDL NXXXXXXXXX XAVASAASPS ISSFRSMPFR 180 KLSGCYECRM VVDPVLGMTR DPSLRNTVCS CPDCGEIFMK PENLELHQAV RHAGN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547396.1 | 2e-70 | uncharacterized protein LOC105176601 | ||||
TrEMBL | A0A2G9H645 | 1e-61 | A0A2G9H645_9LAMI; Uncharacterized protein | ||||
STRING | VIT_18s0001g03670.t01 | 1e-53 | (Vitis vinifera) |