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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100207870011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 135aa MW: 15827.1 Da PI: 9.3302 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ ++ ++G +W++ +++ g++R++k+c++rw +yl Ote100207870011|100207870011 14 KGAWSQDEDNKLKAYIMRYGHWNWRLLPKYAGLRRCGKSCRLRWVNYL 61 79******************99************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.648 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.56E-21 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.30E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 3.973 | 62 | 117 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 65 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVRPPSFDSN GIKKGAWSQD EDNKLKAYIM RYGHWNWRLL PKYAGLRRCG KSCRLRWVNY 60 LKPGLKRGEF SKEEQDLVIK LHFELGNKYG DQLDSLLSDI LEAATNYNQI LELDYNWMAG 120 DDDRLILGVG RRKMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-12 | 14 | 107 | 7 | 99 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100326.1 | 2e-49 | myb-related protein Myb4 | ||||
Swissprot | Q9C9C8 | 5e-34 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A075BMN9 | 1e-49 | A0A075BMN9_SALMI; MYB-related transcription factor | ||||
STRING | Migut.M00365.1.p | 2e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |