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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100207650011 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 338aa MW: 37889.4 Da PI: 8.9922 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00053 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H + +
Ote100207650011|100207650011 63 WKCEKCSKKYAVQSDWKAHCKIC 85
58*****************9987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 338 aa Download sequence Send to blast |
MIGHNLPWKL KQRSNKEVKK KVYICPEKSC VHHDPSRALG DLTGIKKXXX XXXXXRKHGE 60 KKWKCEKCSK KYAVQSDWKA HCKICGTREY KCDCGTLFSR KDSFITHRAF CDALAEDSGR 120 FNNPVNFRNE LMTGRMNMDN HYPQFQGMMN NHLNLDLQKP RXXXXXXXXX XXXNNFAAAG 180 GLPELVQMAS QQNQWFTRGQ EETTFNDINS SPSSSIPIQR VLKEDDENKA NLSEAINSLY 240 NNCSNIPPPP MSATALLQKA AQMGSITATN PSVFATAGFG IAPVAEXXXX XPAKQSRLTT 300 ALIDGESGLT RDFLGVGGNE IENRXXXXXS SQNSPPWA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_C | 2e-35 | 59 | 126 | 3 | 70 | Zinc finger protein JACKDAW |
| 5b3h_F | 2e-35 | 59 | 126 | 3 | 70 | Zinc finger protein JACKDAW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011089318.1 | 1e-116 | protein indeterminate-domain 9 | ||||
| TrEMBL | A0A4D8ZE25 | 1e-111 | A0A4D8ZE25_SALSN; Uncharacterized protein | ||||
| TrEMBL | A0A4D9ARF5 | 1e-111 | A0A4D9ARF5_SALSN; Uncharacterized protein | ||||
| STRING | VIT_06s0004g03070.t01 | 1e-101 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA103 | 24 | 350 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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