PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100206330011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 345aa MW: 38321.8 Da PI: 8.8615 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.8 | 3.6e-33 | 203 | 259 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rak+e+++kl k+rkpylheSRh+hAl+R RgsgGrF Ote100206330011|100206330011 203 DGPIYVNAKQYHGILRRRQTRAKMEAQNKL-VKTRKPYLHESRHQHALNRVRGSGGRF 259 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.4E-36 | 201 | 262 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.736 | 202 | 262 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.4E-24 | 205 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.4E-28 | 205 | 259 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.4E-24 | 236 | 259 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MSQVVESLAA RNCSLFCSFM ASLALLVKVD PSLMYGINLN CLPPTHHAVN LHEQHFSQTI 60 SKSFNFEADH SPQRGRQVKY LDFRLRDQHS SSTESTSLSH KKLTAMEKTT SQDQCASSDS 120 VHDESYGKQG QDMKAALYLC NPELSINASQ AEISQPIVQF PYPYSDPYFN GLFAAYGPHN 180 IMQPQMMAAA SGRVPLPVDL PEDGPIYVNA KQYHGILRRR QTRAKMEAQN KLVKTRKPYL 240 HESRHQHALN RVRGSGGRFL SSXXXXXXXX XXESVHASSS QSESIRFSYD GSSGGEGMMQ 300 GGGGLVYNGN QHYASILKSM FAMKFGAEFI AMVSTPVASL FVHVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 203 | 261 | 2 | 60 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093783.1 | 1e-132 | nuclear transcription factor Y subunit A-3 isoform X4 | ||||
Refseq | XP_011093784.1 | 1e-132 | nuclear transcription factor Y subunit A-3 isoform X4 | ||||
TrEMBL | A0A2G9HRD3 | 1e-119 | A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2) | ||||
STRING | Migut.J00955.1.p | 1e-98 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |