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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100204610001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 245aa MW: 28422.6 Da PI: 10.1024 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 12 | 66 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R +f+++q++ Le+ Fe++ p + +++LA+klgL+ rqV +WFqN+Ra+ k Ote100204610001|100204610001 12 SRRKRFNDDQIKSLETTFESEARPELHLKQHLANKLGLQPRQVAIWFQNKRARSK 66 57999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 104.8 | 6.7e-34 | 13 | 104 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +++r++++q+k+LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+ + e+L+k Ote100204610001|100204610001 13 RRKRFNDDQIKSLETTFESEARPELHLKQHLANKLGLQPRQVAIWFQNKRARSKSKQIEQEYSVLKSNYDNLALQFEALKK 93 799****************************************************************************** PP HD-ZIP_I/II 83 eveeLreelke 93 e+++L ++++ Ote100204610001|100204610001 94 ENQTLLIQVQK 104 *****988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.135 | 8 | 68 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-16 | 10 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-16 | 11 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 13 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-17 | 13 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.08E-13 | 13 | 69 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 43 | 66 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-15 | 68 | 108 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPTNIKKITK NSRRKRFNDD QIKSLETTFE SEARPELHLK QHLANKLGLQ PRQVAIWFQN 60 KRARSKSKQI EQEYSVLKSN YDNLALQFEA LKKENQTLLI QVQKLRKMAD SNDGEENEKN 120 HHIKLEASQD KSFVLDINSH ELRMPLCGEP NGRIDYLDEA DVLNMAQIAE NSLASPENGC 180 SLESYNSIQF LEMDARDHKA RITRIGFVLL QKNVILFLQS FLIKHQIRSV SRKGKQHMLV 240 GRKTL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070385.1 | 2e-80 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A4D8YB51 | 4e-97 | A0A4D8YB51_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.E00626.1.p | 2e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |