PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100204310071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 695aa    MW: 77865 Da    PI: 8.374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100204310071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08581630147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                   r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Ote100204310071|100204310071 581 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 630
                                   679***********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.01E-7393486IPR029071Ubiquitin-related domain
PROSITE profilePS500538.894399469IPR000626Ubiquitin domain
PROSITE profilePS5129415.606576635IPR017930Myb domain
SuperFamilySSF466897.69E-14578669IPR009057Homeodomain-like
SMARTSM007176.1E-7580633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10581631IPR009057Homeodomain-like
CDDcd116605.35E-17582631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MCRGIAATGF ASHFHAAASK AAMAHERTGL RQFFAIVEYG LDDWVVEVSR ILGEEENDVV  60
IEDNSWWHER KFASLKKRLD YGFNGYQLPP TPRAARSVRR RSLLKRKADD NQMCAFDLLA  120
TVAGKLLSDG NNSVGKEEKE KSCERDCYER NFLFTEIVSE APDPNSCSNE LAFAQNDVIS  180
RPASGITSSD CSEKIGSAEE LVNDDCMLSL GISTPSVDIE SRKEIKPDSA NIRNSSTSTK  240
VSLCSSDHSV KIPFCRENVK LTNKDDDDNS SECIEPSIRN KAFKPNGDRR SRKLLSPKHC  300
KMITSNAKDD ERCDYLDRKN CFKCQRSLRD YPFKKRKLYD CASSSNSDES ITADEMIQVS  360
EYGANEDGLK SVPSLQGGNT APNSIGGGYA SFHSKNSQVK LRIKSFRVPE LFIEIPETAT  420
VGSLKGMVLE AVNTVLGGGL RVGVLLQGKK IRDDHKTLVQ TGISHDNKMD ALGFTLEPNP  480
PSPAPINSFH EDLGQLYNNP QPVSGYPSPP SSAQNTRKQG NQEIHRDHRE SFNNFIKTDH  540
VLPPASESKA IVLAHSMKHD TLAVVPMRKS KRSESTQRRI RRPFTVAEVE ALVQAVEKLG  600
TGRWRDVKLR AFDSAKHRTY VDLKDKWKTL VXXXXXXXXX XXSPQQRRGE PVPQELLDRV  660
LMAHAYWSQQ QPKQQLXXXX XXXXSHPLTL AVFYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-485686764106Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
TrEMBLA0A4D9BW660.0A0A4D9BW66_SALSN; Uncharacterized protein
STRINGMigut.D02080.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348