PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100201070011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 157aa    MW: 17128.5 Da    PI: 9.338
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100201070011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20112146135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Ote100201070011|100201070011 112 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 146
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.048106142IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-17106157IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-14109147No hitNo description
Gene3DG3DSA:3.30.50.102.1E-17110146IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-13111143No hitNo description
PROSITE patternPS003440112137IPR000679Zinc finger, GATA-type
PfamPF003202.7E-18112146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MYHTQSGNSF PMLFSMNGHR GYDEGELYSF ASSSPSASVD CTLSLGTPST RGSNDNNHHH  60
DKKRSSLSNF GWNILPSKHA PPPXXXXXXX XXXXXXXXXX XSSGDPLLAR RCANCDTTST  120
PLWRNGPRGP KSLCNACGIR YKKEERRATA AATTSGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097106.12e-64GATA transcription factor 18-like
SwissprotQ6QPM26e-33GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A2G9HG205e-69A0A2G9HG20_9LAMI; Uncharacterized protein
STRINGMigut.L00521.1.p2e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]