PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100197070011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | SBP | ||||||||
Protein Properties | Length: 212aa MW: 23707.4 Da PI: 8.2458 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 113.3 | 1.4e-35 | 26 | 91 | 13 | 78 |
T--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 13 eakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +a +yhrrhkvCe+h+kap+v+v g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk+++ Ote100197070011|100197070011 26 QAVDYHRRHKVCEMHAKAPKVVVLGMEQRFCQQCSRFHGLAEFDEAKRSCRRRLAGHNERRRKSSQ 91 5679***********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 27.196 | 7 | 89 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-32 | 26 | 93 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-26 | 26 | 76 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-27 | 26 | 88 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
VPQVGEEALL RGSHSAAGVH HQQEGQAVDY HRRHKVCEMH AKAPKVVVLG MEQRFCQQCS 60 RFHGLAEFDE AKRSCRRRLA GHNERRRKSS QEHNSLARKN YQGGQVVNNS ECALSLLSPT 120 PWTTSSPDLP ARCSAALREL IAENRASLLG CRQLFNPNHF PENRGHVTLN LMHAQESAFA 180 LLSPHNNNDN RSSQEDGDAA DCSDLWKLPL GY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 30 | 88 | 26 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090065.1 | 4e-77 | squamosa promoter-binding-like protein 7 isoform X2 | ||||
Swissprot | Q01JD1 | 8e-48 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2G9HWM9 | 3e-75 | A0A2G9HWM9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01573.1.p | 2e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13408 | 14 | 17 |