PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100196200051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 277aa    MW: 31776.5 Da    PI: 4.7713
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100196200051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.81.8e-101885269
                      trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                                  Wt +e l L++ +  +e++ +++    ++W+++ +++ +  ++r+ +qCk kw+ l + y+++k+g+ 
  Ote100196200051|100196200051 18 WTVEESLILVNEVGAVESEWGATLPSFQKWQQIVENCNALDVNRNLNQCKRKWDALLTAYRRVKQGAX 85
                                  ****************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-91683No hitNo description
Gene3DG3DSA:1.10.10.603.9E-41675IPR009057Homeodomain-like
PROSITE profilePS500907.1081874IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEQHESHRT RSKAAPDWTV EESLILVNEV GAVESEWGAT LPSFQKWQQI VENCNALDVN  60
RNLNQCKRKW DALLTAYRRV KQGAXXXXXX XXXXXXXXXX XXXXXXXXGS VISAEEEKHV  120
AMETDPDSDP EVQGHAPQFF FETGSKKQRP RMKRQKRRIE TRNPWGYFTS TITKHEESAS  180
LHEPAKDTNV VESMAEEMNA ESEEQIMATM LWENAVQINA ILEGNIGDNE DYRLSDFKNA  240
EAVEIDIARR KGDKLIDCLE KISTTLNQLC DIVQKCN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022874386.13e-96trihelix transcription factor ASR3
TrEMBLA0A4D8ZR271e-123A0A4D8ZR27_SALSN; Uncharacterized protein
STRINGMigut.E01408.1.p1e-91(Erythranthe guttata)
STRINGMigut.E01420.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124