PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100192970041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 8531.59 Da PI: 8.9788 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.8e-07 | 9 | 51 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ + + +a + + + +W +a+ +g g+++ ++k ++ Ote100192970041|100192970041 9 WTPKQNKMFEKALAVYDQDtpdRWQNVANAVG-GKSAAEVKRHY 51 *****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.7E-5 | 5 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.34E-12 | 8 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.40E-6 | 9 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-4 | 9 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-5 | 9 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MASNSISLWT PKQNKMFEKA LAVYDQDTPD RWQNVANAVG GKSAAEVKRH YDILVEDLKH 60 IESGNVPFPS YRPNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-30 | 9 | 72 | 11 | 74 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022884937.1 | 1e-38 | transcription factor RADIALIS-like | ||||
Swissprot | Q1A173 | 6e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2G5EJ72 | 1e-37 | A0A2G5EJ72_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_007_00235.1 | 2e-38 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |