PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100192440111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YA | ||||||||
Protein Properties | Length: 191aa MW: 21359.8 Da PI: 9.3602 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.2e-32 | 106 | 162 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg gGrF Ote100192440111|100192440111 106 EEPVFVNAKQYHGILRRRQSRAKAESENKL-SKPRKPYLHESRHLHALRRARGMGGRF 162 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.6E-35 | 104 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.256 | 105 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-27 | 107 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-23 | 108 | 130 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 110 | 130 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-23 | 139 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTSSIHSPSD NYEAYEQQKP DESYVQPLPP AKGMCHPGTA PPAMQYASPA QVGTGNAQTA 60 YPYPDPYYRS IFAPYEAQPY PSQPMVQLQL MGIQQAGVPL PSEAVEEPVF VNAKQYHGIL 120 RRRQSRAKAE SENKLSKPRK PYLHESRHLH ALRRARGMGG RFQKKNDKTK EVGSDEKSQD 180 SSNLNSERDA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 105 | 162 | 1 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096682.1 | 1e-100 | nuclear transcription factor Y subunit A-7-like isoform X6 | ||||
Swissprot | Q84JP1 | 2e-60 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A4D9A4N0 | 3e-97 | A0A4D9A4N0_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01893.1.p | 3e-91 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6650 | 23 | 33 |
Publications ? help Back to Top | |||
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