PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100192440101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91918 Da    PI: 5.8854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100192440101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18563357
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ote100192440101|100192440101  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 63
                                  6789*****************************************************97 PP
2START156.71.8e-491553622204
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++ 
  Ote100192440101|100192440101 155 IAEETLTEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCHDVA 234
                                   6899******************************************************.8999999999************ PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157
                                    +i +g  g+++l +++ +a+++l++ Rdf+++Ryi +l++g++vi+++S++  +  p       +vRae+lpSg+li+p+
  Ote100192440101|100192440101 235 SAIPTGngGTIELVYMQVYAPTTLASaRDFWTLRYITSLEDGSLVICERSLTASTGGPAgppATCFVRAEMLPSGYLIRPC 315
                                   *****************************************************999998777899**************** PP

                                   CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                         START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                   ++g+s +++v+h+d ++++++++lr+l++s+ + ++k+++a l++ +
  Ote100192440101|100192440101 316 EGGGSIIHIVDHIDFDSNSVPEVLRPLYESSKILAQKMTMAGLRHIR 362
                                   ******************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.629164IPR001356Homeobox domain
SMARTSM003891.6E-15268IPR001356Homeobox domain
CDDcd000861.13E-16565No hitNo description
PfamPF000463.2E-16563IPR001356Homeobox domain
SuperFamilySSF466893.08E-16667IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-18760IPR009057Homeodomain-like
Gene3DG3DSA:1.20.5.1702.8E-461113No hitNo description
PROSITE profilePS5084822.79145346IPR002913START domain
CDDcd088751.16E-65149365No hitNo description
Gene3DG3DSA:3.30.530.202.3E-19153359IPR023393START-like domain
SMARTSM002342.5E-43154364IPR002913START domain
PfamPF018526.4E-47155362IPR002913START domain
SuperFamilySSF559613.02E-34155366No hitNo description
PfamPF086703.0E-49694838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERV YAECPKPSSL RRQQLIRECP ILANIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM XXXXXXLMEE NDRLQKQVSQ LVYENGYMRQ QLHTVSSTTD  120
TSCDSVVMSG QQQQQNPTPQ HTQRDTNSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM  180
KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RLSWFRDCRC HDVASAIPTG  240
NGGTIELVYM QVYAPTTLAS ARDFWTLRYI TSLEDGSLVI CERSLTASTG GPAGPPATCF  300
VRAEMLPSGY LIRPCEGGGS IIHIVDHIDF DSNSVPEVLR PLYESSKILA QKMTMAGLRH  360
IRQIAQETNG EIQLSGGRQP AVLRALSQRL CRGFNDAVNG FVDDGWSIMA SDGVEDVTIA  420
VNSSPSKFLG SQYNNLSMLP TFGGVLCARA SMLLQNVPPA LLVRFLREHR SEWADYGVDV  480
YCAASLKASP YAVPCSKPGG FPSSQVILXX XXXXQTVEHE EFLEVVRLEG HAFSPEEIAL  540
SRDMYLLQLC SGIDETTSGA CAQLVFAPID ESFGDDAPLL PSGFRVIPLE PKSVGDGPAA  600
TRTLDLASAL EVGHSGARAS GEADTSAQNL RSVLTIAFQF TFENHYRDSV AAMARQYVRS  660
IVASVQRVAM AIAPSQLSSH MVPKPLPGSP EAVTLAQWIC RSYSMHTGGE LFPANSPTGD  720
AVLKQLWHHS DAIMCCSVKM NASAVFTFAN QAGLDMLETT LVALQDIMLE KILDEAGRKI  780
LLSEFSKIMQ QGFVYLPAGV CVSSMGRPVS YEQAIAWKVL NDEDANHCLA FMFMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A4D9B1U80.0A0A4D9B1U8_SALSN; Homeobox-leucine zipper protein
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]