PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100191660071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 23719.6 Da PI: 7.7415 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.3e-06 | 121 | 140 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r n++ H+ Ote100191660071|100191660071 121 FSCNICSKTFNRYNNMQMHM 140 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.77E-6 | 107 | 144 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 121 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDFLKFPLFY QHHHETVQCL PLLSRFTEEK DVKEDVDDEK IETVTVALHI GLPDIGEVDV 60 DREKGKRCSF DGGEDECSXX XXXXXXXXXR RRSSNGCNFS DDERRFWIPT PAQILVGPMQ 120 FSCNICSKTF NRYNNMQMHM WGHGSEFRKG PESLRXXXXX RCCGYRATAA PRAARTTSTT 180 PAQSPSRTSA PSRRTTSAST APGPTPAASP A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022872292.1 | 4e-55 | zinc finger protein WIP3-like | ||||
TrEMBL | A0A4D8ZLM0 | 2e-56 | A0A4D8ZLM0_SALSN; Uncharacterized protein | ||||
STRING | VIT_06s0080g00270.t01 | 2e-48 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |