PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100190950121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 331aa    MW: 35597.4 Da    PI: 4.9533
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100190950121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17229262134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C +C  tkTp+WR gp g+k+LCnaCG++y++ +
  Ote100190950121|100190950121 229 CMHCEITKTPQWRAGPMGPKSLCNACGVRYKSGR 262
                                   99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.2E-704307IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.385223259IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-16223273IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-14227286No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14227260IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.18E-13228275No hitNo description
PfamPF003201.9E-15229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGPNLVDDID CGNFFDQIDD LIEFPPENEC GGGSGSGSTD FVSAGADDFP SMWNDALPET  60
DPFFSTGGSA SDISTELSVP YEDIVQLEWL STFMEDSFSG GGMTIGKEIS SINTEPSHNQ  120
FQTSSPVSVL ESSSTSSPCS GEKITPLSPS HRGPQRARSK RPRPPTFNPT AAIKLISPTE  180
SPPRFIPTGL SNSGAEXXXX XXXXXTLPAN KEERTHEGNA PNQQAIRKCM HCEITKTPQW  240
RAGPMGPKSL CNACGVRYKS GRLFPEYRPA ASPTFVPSLH SNSHKKVVEM RTKLGADATT  300
SPAVDKVIGS IIGGGEDDDN LARLRGGMRR F
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022890097.11e-132GATA transcription factor 8-like
RefseqXP_022890098.11e-132GATA transcription factor 8-like
TrEMBLA0A4D8ZCR71e-123A0A4D8ZCR7_SALSN; Uncharacterized protein
STRINGXP_009760862.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358