PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100188850011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 363aa    MW: 39240.5 Da    PI: 8.225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100188850011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-115581127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  +++++C++++rtG Ck+ ++CkF+H++
  Ote100188850011|100188850011 55 PGEPPCQYYLRTGACKFASSCKFNHPK 81
                                  5899*********************96 PP
2zf-CCCH41.13e-13225249327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++ C++++rtG CkyG++C+++H+p
  Ote100188850011|100188850011 225 QPDCKYYMRTGDCKYGSSCRYNHPP 249
                                   789********************97 PP
3zf-CCCH29.99.9e-10270294226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +   C+f+++ G+Ck+G +CkF H+
  Ote100188850011|100188850011 270 GVQACSFYMQKGHCKFGRTCKFDHP 294
                                   5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-65481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2255482IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-85681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-55882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-45980IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817222250IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7222249IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10225249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6227250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5228248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399268296IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5268295IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7270294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6270299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5273298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPWFLIAIKG GVVELICYDG VGGVVELICY AMQFHTSDCG CDFTQLGVGE YPERPGEPPC  60
QYYLRTGACK FASSCKFNHP KNAGGSLTNA PLNIYGYPLR PGEKECSYYL KTGQCXXXXW  120
HNLATNSYRV ARPPLLPGSY VAGAYGPMLL PGVVSIPNWN PYSGPVSPAP SPGAQPSVGA  180
TSVYGLSQIG SSPPAFAGAY SQLPSSAGPS GGITHEQKFP ERIGQPDCKY YMRTGDCKYG  240
SSCRYNHPPD WAVSKNNCAL SSLGLPLRPG VQACSFYMQK GHCKFGRTCK FDHPISSLKY  300
SPASSYAEMP GTPDRLGFFA ATMTFLPTYS FQEVQGEHIA GSHVDPGRNR AWHSGDSSRG  360
FMF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906884.11e-128zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-105C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D9AJ671e-178A0A4D9AJ67_SALSN; Uncharacterized protein
STRINGEOX949711e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034