PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100186930102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 47426.3 Da PI: 8.4982 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.1 | 1.3e-12 | 18 | 42 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+rC+F+H+ Ote100186930102|100186930102 18 DEPDCIYYLRTGFCGYGNRCRFNHP 42 6899********************9 PP | |||||||
2 | zf-CCCH | 40.5 | 4.6e-13 | 65 | 89 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtG Ck+G++Ck++H++ Ote100186930102|100186930102 65 EPLCKYYMRTGMCKFGASCKYHHPK 89 79*********************96 PP | |||||||
3 | zf-CCCH | 32.3 | 1.7e-10 | 110 | 135 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+++ +tG+Ck+G +Ck++H++ Ote100186930102|100186930102 110 GVKECSYYIKTGHCKFGVTCKYHHPQ 135 6789********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.7e-12 | 276 | 302 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG+Ck+G++Ck++H+p Ote100186930102|100186930102 276 PGQPECQYYLRTGECKFGASCKYHHPP 302 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.8 | 1.4e-11 | 324 | 348 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G C++G++CkF H++ Ote100186930102|100186930102 324 APLCSHYAQNGVCRFGPSCKFDHPM 348 68*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.577 | 16 | 44 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 16 | 43 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-10 | 18 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 20 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 22 | 42 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 67 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.483 | 275 | 303 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-7 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 277 | 302 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 279 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 281 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-7 | 321 | 348 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 321 | 349 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 323 | 350 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-9 | 324 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 326 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MRQMSLGEGP DSYPERPDEP DCIYYLRTGF CGYGNRCRFN HPLDRSAAMG ALRASGGEYP 60 ERIGEPLCKY YMRTGMCKFG ASCKYHHPKH GAGSSSPITL NIYGYPMRQG VKECSYYIKT 120 GHCKFGVTCK YHHPQPAGMQ MPAPGPLAGP AAVPTPSLYP TVQSPSVQSS QQYGVLHGNW 180 PVARPTMLTG SYVPGSYGPM LLAPGVVPVP GWSPYSAQVS HGGLQSTQPT VGAGSVYGIT 240 QLPPSSSTYT APYLSSTSYA GPLSSSQKDH VFPERPGQPE CQYYLRTGEC KFGASCKYHH 300 PPEWSAQKSI VLLSPMGLPM RPGAPLCSHY AQNGVCRFGP SCKFDHPMRA LSYSTSSSSL 360 TDMPVAPYPV GSTSATLAPS SSSSDLRPEH QSGFSKDAFS ANLSSTHSSS ASVGSTFSAS 420 MPTCEFGVHH SGQGTISSTV VSSSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090931.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 1e-146 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A4D8Z2S6 | 0.0 | A0A4D8Z2S6_SALSN; Uncharacterized protein | ||||
STRING | Migut.G00186.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |