PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185850181
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 391aa    MW: 45118.3 Da    PI: 5.053
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185850181genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34211122102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye+++d+ ++ ++ ws+n++sf+vl++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+
  Ote100185850181|100185850181  21 FLAKTYEMVDDPCTNPIVCWSQNNKSFIVLNPPEFSRVLLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFA 92 
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+ +ll++i+r+k 
  Ote100185850181|100185850181  93 NEDFIRGHPHLLKNIHRRKP 112
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.13E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6217110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.8E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRKSQVTMDE ASCSSNALPP FLAKTYEMVD DPCTNPIVCW SQNNKSFIVL NPPEFSRVLL  60
PRYFKHNNFS SFIRQLNTYG FRKVDPEQWE FANEDFIRGH PHLLKNIHRR KPVHSHSTPN  120
LTSLSPLTEL ERKGYKEEIE RLKCDTESLN VELQSHKEEQ QSLVLQMRAL TERIQNVDFH  180
HDSMLSSLAE TLHQPDFSPD RIPQMEVHDR KRRFHGNRYL CEETSTEDCQ RPYPHNFSTE  240
NLDADALLTG NKEWLDQIES SLMLWEKIIL DVGEGMGKCN SPLELVESEI DMNVTPKSIG  300
ARAQELQPPN EEEEIGATTN VRTGVNDVFW EQFLTENPGS NSTSDFHSER DVGDGKRDEN  360
KPGDNGMHWW NMRSVNNLAE QLGHLTPAEK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231111020129Heat shock factor protein 1
5d5v_B5e-231111020129Heat shock factor protein 1
5d5v_D5e-231111020129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.10.0heat stress transcription factor A-4a
RefseqXP_011101447.10.0heat stress transcription factor A-4a
TrEMBLA0A4D8XUR00.0A0A4D8XUR0_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.M00999.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344