PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100185610102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YB | ||||||||
Protein Properties | Length: 178aa MW: 19994.8 Da PI: 4.3971 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.6 | 8.2e-20 | 11 | 84 | 3 | 76 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al +l + Ote100185610102|100185610102 11 KEDASLPKATMTKIIKEMLPPEVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALENLQM 84 6899*****************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-28 | 10 | 160 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.66E-27 | 12 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PEVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREEKRTI APEHVLKALE NLQMHLVDEV FILSFDLEES ILRTQFLAKI IDICQVSWHC 120 ELAVDTVRSG KWSNGAEMTE EEALAEQQRM FAEARARMNG GASAPKQSDS ETQPSANS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-25 | 12 | 155 | 12 | 133 | Transcription Regulator NC2 beta chain |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096999.1 | 2e-86 | protein Dr1 homolog | ||||
Refseq | XP_011097000.1 | 2e-86 | protein Dr1 homolog | ||||
Swissprot | P49592 | 3e-69 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A4D8ZI50 | 1e-82 | A0A4D8ZI50_SALSN; Uncharacterized protein | ||||
STRING | Migut.D01587.1.p | 4e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3820 | 22 | 44 |
Publications ? help Back to Top | |||
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