PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184980051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 398aa    MW: 44252.3 Da    PI: 6.4502
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184980051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31188243359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   Dg++WrKYGqK+vkgse+prsY++Ct ++Cpv+kkvers+ d+++++i+Y+g Hnh+
  Ote100184980051|100184980051 188 DGFQWRKYGQKHVKGSEHPRSYFKCTGSNCPVTKKVERSH-DGQIIQIVYKGLHNHP 243
                                   9***************************************.***************8 PP
2WRKY107.37.8e-34329387159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+a+d k v++tYeg+Hnh+
  Ote100184980051|100184980051 329 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERAADDIKSVITTYEGKHNHQ 387
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-24184245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-27184245IPR003657WRKY domain
SMARTSM007745.0E-33186244IPR003657WRKY domain
PfamPF031063.9E-25188243IPR003657WRKY domain
PROSITE profilePS5081122.951188245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-37314389IPR003657WRKY domain
SuperFamilySSF1182902.35E-29322389IPR003657WRKY domain
PROSITE profilePS5081137.608324389IPR003657WRKY domain
SMARTSM007741.0E-38329388IPR003657WRKY domain
PfamPF031065.4E-26330387IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAANGGGPPF IKKEEGFDSD CNSVSVIQSN NVSNYSNNHH LLHHAGESGE XXXXXXXXXX  60
AERRAANCGF NVSNINATRF NTAQVPPYFT VPPGLSPSAL LDSPVMLLDV QGQLSPTTGT  120
FQIPSPNHET LKLKLKLSRD GKEEAMDTFP DSTNTNTNNF MTEDKEMRDL EDGSDEEKLE  180
MGVNNKPDGF QWRKYGQKHV KGSEHPRSYF KCTGSNCPVT KKVERSHDGQ IIQIVYKGLH  240
NHPRPYPATG QDEEGDDEGE FQPTQDFDAS EANGDLDYKI FNANGECEVR KRKGEGSNSS  300
SFANEISGLP RSTREPKVVV QIKSEIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTPGC  360
PVRKHVERAA DDIKSVITTY EGKHNHQVPS STKNNNAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37188390878Probable WRKY transcription factor 4
2lex_A8e-37188390878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834461.11e-110PREDICTED: probable WRKY transcription factor 25
SwissprotO655905e-75WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A2Z7CL441e-112A0A2Z7CL44_9LAMI; Putative WRKY transcription factor 20
STRINGXP_009794073.11e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]