PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100183920031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 1050aa    MW: 115254 Da    PI: 6.6292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100183920031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077815837123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cg   +++++L rH+  H
  Ote100183920031|100183920031 815 HSCSLCGLKLKSQEQLDRHMEWH 837
                                   79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5139137.81237165IPR006569CID domain
SuperFamilySSF484643.66E-3939161IPR008942ENTH/VHS
Gene3DG3DSA:1.25.40.901.1E-4339172IPR008942ENTH/VHS
SMARTSM005828.8E-4440162IPR006569CID domain
CDDcd035624.86E-3342152No hitNo description
PfamPF048184.6E-993146IPR006903RNA polymerase II-binding domain
PROSITE profilePS501579.868815842IPR007087Zinc finger, C2H2
PROSITE patternPS000280817837IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MESTRRPFNR SLSKEPGLKK PRLTEDLAAA DQAGLQLHQE LVTQYKTALA ELTFNSKPII  60
TNLTIIAGES LTAAKAIAAT ICNNILEVPS EQKLPSLYLL DSIVKNIGRD YIKYFASRLP  120
EVFTKAYRQV DPSIHQGMRH LFGTWKGVFP PQTLQMIERE LGFTSAANVS APSRTDSQAQ  180
RPAHGIHVNP KYLEARQRLQ TSKPRGADSD TSGALVNSHE DVEALDRTAS ISSGRLWADP  240
YAKHNQRDQV NKQVREKSSG LPYADSGYGS GLLGRSGLGS GRIMEHLKEP GYGRSWNESG  300
SEMIGMAHKK NAFGLKQGLE SYAAHESANF DSDLQHKQNM SSRNTNGMRE NWKDSEEEEY  360
TWSEMNSRPT VADVPAKNHW APGNYDRSDF ESHLPGHQNI HDIGSRDDDD EVPVDSISML  420
SRTSKTLSGY SEGYPTGLKS SQSAMIRTHS QSQQGQTHAG STNFKFPMNE MRLSKSSIGQ  480
KPLTLAPSSS TQSLINQNPP LHSVSSHSQN QFLNKFSECN PTVVGPPTDP RRRLVQKATS  540
HRDQLPEDSP VQTREIHKVS SQRLQPSNLR SVSTLMPRTQ QRNLDACQFE SSSPEHRMLP  600
SQISGSESHS TMGNSSSDQS NPFTVDSPGK SITSSQNDTN TQNATPNVSS SPRSHGSISI  660
AGFSKKKVER PPLPTALPSS SLAGFGSEQT PSAVSSGSNP FSSLLSSLVA KGLISSSNSD  720
PLLSASPKPD QPADRVPGTA NTSPAPVSSV PVTMPKPIVS VEEEPSSSEQ TVRASDSLTL  780
STEKIKHLIG FELKPNVIRN FHPDVISDLF CNFPHSCSLC GLKLKSQEQL DRHMEWHASR  840
VPDHDSLSKM SRSWYTNVID WVTGVGVGHL ESSPFDIGSS GDILESSEPL VPADESQCAC  900
ILCGELFEDF YNQERDEWMF KGALYLTPSM DERHGPISGA SIRSPIVHYD CISEDTINDM  960
GLASDIRLNF AYETLNYLTP GKECVASQGG KVDLMMLAHN QCHCSMEMSG SFAFTFSDLG  1020
WPLKVMPNAN VVFRQDALSF WYTIYGPYNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A5e-16411678141PCF11 protein
1sz9_B5e-16411678141PCF11 protein
1sz9_C5e-16411678141PCF11 protein
1sza_A5e-16411678141PCF11 protein
1sza_B5e-16411678141PCF11 protein
1sza_C5e-16411678141PCF11 protein
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101505.20.0LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
TrEMBLA0A4D8Z9C40.0A0A4D8Z9C4_SALSN; Pre-mRNA cleavage complex 2 protein Pcf11
STRINGMigut.L01755.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA494455