PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100183750221

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 274aa MW: 31103.1 Da PI: 7.4568

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100183750221	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.6e-33	53	107	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Ote100183750221\|100183750221 53 KPRLKWTAELHQRFVDAVKQLGGPHKATPKSLMRIMGIQGLTLYHLKSHLQKYRL 107 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.33	50	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-30	51	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-16	52	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	53	108	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	55	106	IPR001005	SANT/Myb domain
Pfam	PF14379	8.6E-15	139	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
SQHNQPHLCF QIWSENIRHA NNYKENYHLP HTHTNINIMP HQQTNLLLSS DAKPRLKWTA 60 ELHQRFVDAV KQLGGPHKAT PKSLMRIMGI QGLTLYHLKS HLQKYRLGRS HHVKQQGENS 120 GSNSNCNAEE AQINDVQALE MQRKLEQQIE VQRHLQLRIE AQGRYLQSVL KKAQETLSRY 180 SACAVEVADS GCTTSSLTES EGSMLKEKLL GCSMEISLTF SHKNNQSDDD DGRSAEEWSA 240 KKNIDLNELD SGPTGIDLXX XXXXXXXXXF GSTF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-19	53	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	53	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	53	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	53	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075513.1	2e-69	myb family transcription factor PHL8-like
TrEMBL	A0A2G9I2S8	3e-68	A0A2G9I2S8_9LAMI; Uncharacterized protein
STRING	Migut.E00086.1.p	2e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32