PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100183290261
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 390aa    MW: 44908.1 Da    PI: 5.7149
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100183290261genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35141042101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye+++d+ ++ ++sw+++g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF+
  Ote100183290261|100183290261  14 FLLKTYEMVDDPITNAVVSWNRTGHSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPDQ---------WEFA 85 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +++F +g+++ll++i+r+k
  Ote100183290261|100183290261  86 NEEFIRGQRHLLKNIHRRK 104
                                   *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDGTNGGSSS PAPFLLKTYE MVDDPITNAV VSWNRTGHSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS GPGNAAPFTD  120
SEREEFEKEI EKLKQEKVTL QTEVERYKQE NRGYECELRS LGQTLQNIDH RQRQLVVNLA  180
HLLQSPPHGL DQSESPNKKR RLLALHYLKD EADILSEDNG MMMMIKEDSS PSSLPLVDLK  240
QVEKLDSSLT FWERFLHGTA REESPSSPVD SDFNIPPCTP ECRSSPELAE PSPYVDSLPL  300
SSIHIDGDSK HEPSVDMNVR SAKDQEQKTG FRSVPANDVF WQQFLTEAPA SEQRELYEKE  360
SGRFSDEHKR WWIGDGLGQH MGHLTQVERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25310319129Heat shock factor protein 1
5d5v_B2e-25310319129Heat shock factor protein 1
5d5v_D2e-25310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.11e-157heat stress transcription factor A-4b
TrEMBLA0A4D9AY571e-171A0A4D9AY57_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.H02116.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329