PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100183280031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 159aa MW: 18089.7 Da PI: 5.6877 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 30.1 | 6.2e-10 | 97 | 149 | 323 | 374 |
GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF+ ++e++ + a++llrk++ ++++rvee++g++ l Wk++p+ + S W+ Ote100183280031|100183280031 97 GFRGEVFGEETIDGARALLRKYDnNWEMRVEEKDGCFGLWWKGQPVSFSSLWK 149 999999*****************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.2E-7 | 97 | 149 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MENFHLKNLN SQAINSTSDE TLVVCAQFRL HNLNHSGPDE RTEFLRVLRS LXXXXXXXXX 60 XXXXXXXXXX XXXXSAVASA AGISQLASLE GWSIYGGFRG EVFGEETIDG ARALLRKYDN 120 NWEMRVEEKD GCFGLWWKGQ PVSFSSLWKI DVKVKECLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646971.1 | 3e-28 | PREDICTED: LOW QUALITY PROTEIN: nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 7e-22 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
STRING | EOY27249 | 2e-27 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Publications ? help Back to Top | |||
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