PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100183100041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 144aa MW: 16284.7 Da PI: 9.8306 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.3 | 2.1e-29 | 12 | 64 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + YkeClkNhAa++Gg ++DGCgEfm+ geegt +alkC+AC+CHRnFHR+ Ote100183100041|100183100041 12 LGYKECLKNHAAAIGGCSTDGCGEFMAG-GEEGTLEALKCSACNCHRNFHRKIL 64 67*************************9.999*******************976 PP | |||||||
2 | Homeobox | 19.6 | 1.5e-06 | 79 | 135 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+f +eq e + ++ e k ++ +++e ++L +++g++ ++VkvW +N ++ Ote100183100041|100183100041 79 KRFRTKFDEEQKEKMLRFAEkagwKMQKADEAEVRRLCEEIGVKRKVVKVWMHNNKY 135 789************88777777789****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.4E-26 | 13 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.3E-27 | 14 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.977 | 14 | 63 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-19 | 14 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-29 | 68 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.31E-20 | 70 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.503 | 76 | 140 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.4E-27 | 78 | 135 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 4.34E-4 | 79 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSRSITIPSQ GLGYKECLKN HAAAIGGCST DGCGEFMAGG EEGTLEALKC SACNCHRNFH 60 RKILMAQQGG GVERREGKKR FRTKFDEEQK EKMLRFAEKA GWKMQKADEA EVRRLCEEIG 120 VKRKVVKVWM HNNKYHFANK TNTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 79 | 134 | 18 | 73 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845004.1 | 1e-58 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
Swissprot | O64722 | 2e-45 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A2G9HR66 | 8e-62 | A0A2G9HR66_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H02547.1.p | 6e-58 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Publications ? help Back to Top | |||
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