PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100181100271
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YA
Protein Properties Length: 291aa    MW: 32072.8 Da    PI: 10.0296
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100181100271genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.1e-32144200158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   +ep+YVNaKQy++Il+RRq Rak+e e+kl  k+rkpylheSRhkhA+rR RgsgGrF
  Ote100181100271|100181100271 144 EEPVYVNAKQYHGILRRRQIRAKAEMERKL-VKNRKPYLHESRHKHAMRRLRGSGGRF 200
                                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-36142203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.14143203IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-28145200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24146168IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860148168IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24177200IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPALTVSNNR QVEKGLRSIQ TTAPYGQPWW QGLGSNDMPS SEQQGDSSIA TATVQPQGSV  60
GGIPKGIETN AALHSGLNRV NNGQEQQQLD ANSQMELVGH SIMLTSYPYA DQQYGGILTY  120
GAPVPPHLLG YHPGRMPLPL EMKEEPVYVN AKQYHGILRR RQIRAKAEME RKLVKNRKPY  180
LHESRHKHAM RRLRGSGGRF LNTKKSDSKE NSDQPKSGET LSSSNSNGAP DQHMNGALSM  240
VEETNKDHAL SHKISNSHGV GPYYSRGDLR SGYFSENNWK LMVNGGPSSS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22144213271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093323.11e-112nuclear transcription factor Y subunit A-1-like
RefseqXP_011093324.11e-112nuclear transcription factor Y subunit A-1-like
TrEMBLA0A4D9BFW01e-144A0A4D9BFW0_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000176989e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025