PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100180120021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 388aa    MW: 43409.5 Da    PI: 7.8279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100180120021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000446687223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ Cgk F +   L  H+ +H
  Ote100180120021|100180120021 66 VCKQCGKGFQSMKALCGHMASH 87
                                  6******************999 PP
2zf-C2H212.40.00046336358123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + Cp C+++F++   L  H r+H
  Ote100180120021|100180120021 336 HACPFCDRVFKNGQALGGHKRSH 358
                                   67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.046587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2426592IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-46689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.86E-66687No hitNo description
PfamPF139123.0E-66789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SuperFamilySSF576675.86E-6263287No hitNo description
PfamPF139124.4E-7268287IPR007087Zinc finger, C2H2
SMARTSM00355230268288IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.21E-5332360No hitNo description
PfamPF139122.1E-8335358IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245336358IPR007087Zinc finger, C2H2
SMARTSM003550.029336358IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAEASRKFPC GRPHVVVNSV EFDEMSMNKN PFLNESKLGE SVNGQXXXXX XXXXXXXXWR  60
AVDANVCKQC GKGFQSMKAL CGHMASHSDK DKGSGDHDHS WTNENQKMVL DGQSDTETEE  120
MRLRTRSSKS RKCKKISDDY VLASNGGSSV SEIDGQEQEE VAKCLMMLSR DSGSKNSVSD  180
NNSVVVSSST EMKVDRVEKN EPSKLGNGKI EEDSDSGYFL DECASDVSVG WFRRXXXXXX  240
XXXXTGSKIE SRKRRNDGYE NQEPARKYEC FNCKKVFKSY QALGGHRPCN KRICESHDES  300
GENSPAYYRA NTKFVETKPS AKNSAEKKNK SKNKVHACPF CDRVFKNGQA LGGHKRSHFL  360
TGHVENRASP VEKADLLDLN IPAPEVDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075585.11e-108uncharacterized protein LOC105160026
TrEMBLA0A2G9HWQ11e-110A0A2G9HWQ1_9LAMI; Uncharacterized protein
STRINGMigut.L01205.1.p3e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255