PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100179200281
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 674aa    MW: 75682.4 Da    PI: 9.5925
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100179200281genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-10494518327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +  C+++ rtG C++G++C+F+H+p
  Ote100179200281|100179200281 494 EQDCSYYIRTGLCRFGPTCRFNHPP 518
                                   678********************96 PP
2zf-CCCH37.44.1e-12539563327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +++C ++++tGtCk+G++CkF+H++
  Ote100179200281|100179200281 539 QPECEYYLKTGTCKFGATCKFHHPR 563
                                   799********************96 PP
3zf-CCCH29.51.3e-09587609527
                                   --SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                   +C ++ r+G+Ck+G++CkF+H++
  Ote100179200281|100179200281 587 ECAYYIRNGQCKFGSTCKFHHPQ 609
                                   6********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5491518IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239491519IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7494518IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5495519IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4497517IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868536564IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6536563IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9539563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6540565IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4542563IPR000571Zinc finger, CCCH-type
SMARTSM003560.001582609IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727582610IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6583610IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6587609IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MEDADDGNSK LTTENVDKDV ILSKEDEKAP PTQEEAKSDP KKASTGNEEP MEDSPIMGVL  60
TPKPAVGTQE TSLSENVVKK AIWERADHIQ ANSEKISLAG VRRLLEEDLG LANKTLDAFR  120
EFISEQVHEV LERPKDVKKK GSETVKSKTP KKACSEEGSD ASQSGSDMRD DVKSRKEAAP  180
RRNSKKSEQQ KKRKISNNAG IDVSRKKQKA AKRQKEDNNS NDDGSLSEDG NSQSSVERPT  240
MRKEKPAPGY GKRVENLKSI IKACGMSVPP NIYKKVKQVP DDKRETFLVK ELEGILSREG  300
LSKNPSEKEI KDCRKRKDTA KELEGIDXXX XQHHIQFKKK SLRSWLWNEV FSLFVVVDSP  360
TVPAGVATML WIQVWGGLRC EGDMDLHTTT TPLSFCGGET PPXXXXXXXX XXXXXXNPRR  420
LRLFRCSSLS SADRLRGHVM WICVVTSNVA SFGNRRLIFR APSRASYLSD ILWQMNMRSR  480
EQMESGPYPV REGEQDCSYY IRTGLCRFGP TCRFNHPPNR KLAIATARMK GEYPERIGQP  540
ECEYYLKTGT CKFGATCKFH HPRDKAGITG RVALNVLGYP LRPNEMECAY YIRNGQCKFG  600
STCKFHHPQP SNMMVALRGS AAYPPIHSPT TSQLSYPLSR ASFIASPRWQ SPSSYAPLVM  660
QQGVVSVPGW NTYS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439