PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100178230161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 478aa    MW: 54956.4 Da    PI: 5.5418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100178230161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.7e-2638130186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrt 72 
                                   rW+++e+laL+++r+em+ ++r+++lk+plW+evs+            e g++rs+k+Ckek+en+ k++k++k+g+++r 
  Ote100178230161|100178230161  38 RWPREETLALLKIRSEMDAAFRDSALKAPLWDEVSSWSlydscfrklGELGYNRSAKKCKEKFENIYKYHKRTKDGRSSR- 117
                                   8**********************************99999999***9*******************************97. PP

                      trihelix  73 sessstcpyfdqle 86 
                                    ++ +++++f+qle
  Ote100178230161|100178230161 118 -NKGKNYRFFEQLE 130
                                   .56668******97 PP
2trihelix97.89.6e-31326410186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev aLi ++++++ +++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk+yk++ke++kkr +e+s+tcpy
  Ote100178230161|100178230161 326 RWPKAEVEALIMLKTDLDLKYQDSGPKGPLWEEISTCMKKLGYSRSAKRCKEKWENINKYYKRVKESNKKR-PEDSKTCPY 405
                                   8*********************************************************************8.99******* PP

                      trihelix  82 fdqle 86 
                                   f+ l+
  Ote100178230161|100178230161 406 FSLLD 410
                                   *9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3331104IPR017877Myb-like domain
SMARTSM007171.335106IPR001005SANT/Myb domain
CDDcd122038.09E-2237111No hitNo description
PfamPF138372.4E-1437130No hitNo description
PROSITE profilePS500907.213319383IPR017877Myb-like domain
SMARTSM007179.7E-4323385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-4325382IPR009057Homeodomain-like
CDDcd122035.29E-25325390No hitNo description
PfamPF138371.1E-22325412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLDSSVFLEN NAGSAEDIGI XXXXXXXXXX DENSVGSRWP REETLALLKI RSEMDAAFRD  60
SALKAPLWDE VSSWSLYDSC FRKLGELGYN RSAKKCKEKF ENIYKYHKRT KDGRSSRNKG  120
KNYRFFEQLE LFENNFSLPS TPLNQIPSYT IETPTTTMTA KDFPMPCSNP DRDAEFMSAS  180
TSTSSSSEES IGKKRKLADY LERLMRNVLQ KQEDLQNKFL EAIEKCEKDR IAREEAWRVE  240
EMARIKREQX XXXXXXXXXX XXXXXXXXFL QKIAQQTPSL TVPEILSPLS EKTPDKQEKN  300
VLEKHSYLQE QDNSAGETAV QMSSSRWPKA EVEALIMLKT DLDLKYQDSG PKGPLWEEIS  360
TCMKKLGYSR SAKRCKEKWE NINKYYKRVK ESNKKRPEDS KTCPYFSLLD SLYASKSKNS  420
QQSSNNGGCN LKPEQILMQM MGQQEQPQNQ EDEAEDDENN GDGYQIVANN LSSVTALG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099803.10.0trihelix transcription factor GT-2-like
SwissprotQ391175e-55TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G9H2520.0A0A2G9H252_9LAMI; Transcription factor GT-2
STRINGVIT_04s0044g00510.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328