PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100177970121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 236aa MW: 26735.3 Da PI: 9.1074

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100177970121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.9e-33	6	60	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl Ote100177970121\|100177970121 6 KPRLRWTSDLHDRFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 60 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-32	3	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.788	3	63	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.6E-25	6	61	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.58E-16	6	63	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-8	8	59	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-23	103	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTRDPKPRLR WTSDLHDRFV DAVTKLGGPD KATPKSVLRV MGLKGLTLYH LKSHLQKYRL 60 GQQQARKQNG LDHNTDFNEN PYGRHSMNTA SSSMNTDRGR EIPIAEAVRC QIEVQKTLQE 120 QLEVQKKLQM RIEAQGKYLQ AILEKAQRSL CADANHSESL ESTKAQLTDF NLALSSFMQT 180 INGDDIKSVV KEAEVGREMK LKVEEPCVEF DLNSRSSYDF IGINGSGFEA KPLQNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	6	59	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	6	59	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	6	59	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	6	59	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092595.1	1e-127	myb family transcription factor PHL11
Swissprot	C0SVS4	8e-77	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2G9GQ22	1e-133	A0A2G9GQ22_9LAMI; Uncharacterized protein
STRING	Migut.A00576.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]