PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100177150051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13866 Da PI: 10.5504 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.6e-19 | 2 | 57 | 42 | 97 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ +++l++ + Ote100177150051|100177150051 2 KGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRAGDIVSFQRSTGLDKQLYIDWK 57 69****************************************87666666777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.098 | 1 | 60 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.14E-16 | 2 | 58 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-23 | 2 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-16 | 2 | 59 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.81E-15 | 3 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MKGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKDLRAGDIV SFQRSTGLDK QLYIDWKSRK 60 AGAEPAATSS ARPNPVQMFR LFGVNIEPAV DCSDSCSGKR MREMEIMGLS CSKKQRIINA 120 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-31 | 1 | 71 | 59 | 129 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070834.1 | 2e-56 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | P82280 | 8e-44 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A2G9GW46 | 1e-57 | A0A2G9GW46_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00306.1.p | 1e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |