PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100176040041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 383aa    MW: 43486 Da    PI: 4.4233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100176040041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36141062103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k ye+++de++++li wse+++sf+++de++fa+++LpkyFkhsnf+SFvRQLn+YgF+k+++++         w+F+
  Ote100176040041|100176040041  14 FLVKCYEMVNDESTNDLICWSESNDSFIIWDESKFASQLLPKYFKHSNFSSFVRQLNIYGFRKIDTDN---------WQFA 85 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++sF kg+k+ll++i r+k++
  Ote100176040041|100176040041  86 NESFIKGQKHLLKNIIRRKQS 106
                                   ***************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.44E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVKSVENGTS LPPFLVKCYE MVNDESTNDL ICWSESNDSF IIWDESKFAS QLLPKYFKHS  60
NFSSFVRQLN IYGFRKIDTD NWQFANESFI KGQKHLLKNI IRRKQSQNPA QKKHLQQKEA  120
EPALPSEEDK RRALLKEVES LKAGKNALTQ ELIKVSQHQK TSRSKMLLLS EQLKGMEKNQ  180
QQMLSFIVMA MQSPEIMAQF FQPKENSWRV AETGKTKLSE VTDDDCYPTP SDGMIVPYQP  240
PKDGVAEPAC ATETPSYEEF MELDFSSDEM RDLLMDVDLL LGPNPVDEKL LSLENQSQFV  300
LPDVTENDTA VLEQLLLPYP SIGNDTVSTF HSEELEMSDG SADDVDENWN QVGEATKLQR  360
GVDASEKVEV LARQMGCLTS ETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-27910324129Heat shock factor protein 1
5d5v_B2e-27910324129Heat shock factor protein 1
5d5v_D2e-27910324129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070552.10.0heat stress transcription factor A-8
TrEMBLA0A4D9A9C60.0A0A4D9A9C6_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.E00498.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222