PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100174200072
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91931.5 Da    PI: 6.3474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100174200072genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-182583357
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ote100174200072|100174200072 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 83
                                  56789****************************************************97 PP
2START158.74.6e-501643672200
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ + g a+ra+g+v  ++    +e+l+d+  W ++++++e+ 
  Ote100174200072|100174200072 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCGGVAARACGLVSLEPS-KIAEILKDRTSWHRDCRSQEIF 243
                                   7899******************************************************.7777777777**********99 PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157
                                        g  g+++l++++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+   +s++vRae+lpSg+li+p+
  Ote100174200072|100174200072 244 TMFPAGngGTIELIYTQTYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGAGPNaaaTSQFVRAEMLPSGYLIRPC 324
                                   99999999********************************************999999999******************** PP

                                   CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS
                         START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200
                                   ++g+s +++v+h +l++++++++lr+l++s+ + ++k++ a l
  Ote100174200072|100174200072 325 EGGGSVIHIVDHLNLQAWSVPEVLRPLYESSKVVAQKNTIASL 367
                                   *************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-18783IPR009057Homeodomain-like
PROSITE profilePS5007115.242084IPR001356Homeobox domain
SMARTSM003895.1E-152288IPR001356Homeobox domain
SuperFamilySSF466893.42E-162386IPR009057Homeodomain-like
CDDcd000864.78E-162585No hitNo description
PfamPF000466.9E-162683IPR001356Homeobox domain
CDDcd146867.78E-677116No hitNo description
PROSITE profilePS5084826.515154368IPR002913START domain
CDDcd088755.32E-68158374No hitNo description
Gene3DG3DSA:3.30.530.202.4E-20163368IPR023393START-like domain
SMARTSM002348.0E-41163373IPR002913START domain
SuperFamilySSF559616.73E-33163354No hitNo description
PfamPF018522.4E-47164367IPR002913START domain
PfamPF086701.8E-48696840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMVVQQHHS DNSSGSINKH LDSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILCNIEPKQI KVWFQNRRCR EKQRKESTRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ SASVPATDAS SESAVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQRCGGVAA RACGLVSLEP SKIAEILKDR TSWHRDCRSQ  240
EIFTMFPAGN GGTIELIYTQ TYAPTTLAPA RDFWTLRYTT SLENGSLVVC ERSLSGSGAG  300
PNAAATSQFV RAEMLPSGYL IRPCEGGGSV IHIVDHLNLQ AWSVPEVLRP LYESSKVVAQ  360
KNTIASLRFI RQIAHETSGE VVYGLGRQPA VLRTFTQRLS RGFNDAINGF NDDGWSLLNC  420
DGAEDVVVAI NSAKNLTAGS SNSSLLGGVL CAKASMLLQN VPPAVLVRFL REHRSEWADF  480
NVDAFAAMSL KSSSCTYPGT RPTRFTGTQI IMPLGQTIEH EEMLEVVRLE GHSLIHEDAF  540
SSRDVHLLQM CSGIDENAVG ACSELLFAPI DEMFPDDAPL LTSGFRIIPL DSKSGDSQDL  600
LTSHKTLDLA SSLEVGPATS SGAENAVSSY NSRSVLTIAF QFPLESNLQE NVATMARQYV  660
RNVISSVQRV ATAISPSGLS PTVGPKVSPS SPEALTLAHW ICQSYSYHVG TELLRPDSMS  720
GGDAILKTLW HHQDAILCCS LKALPVFIFA NQAGLDMLET TLVSLQDITL DKIFDDSGRK  780
ALFSEFAKIM QQGSAFLPGG VCMSTMGRHV SYEQAVVWKV FAAEENTVHC LAFSFVNWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089912.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9I7310.0A0A2G9I731_9LAMI; Transcription factor HEX
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]