PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168710021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 163aa MW: 18038.6 Da PI: 9.3386

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168710021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	143.9	1.7e-44	4	147	3	163
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk 83 v+ +se+vCyv+C+fCnt+lav +P + l+ ++tv+CGhC++l ++ + + q + +h ++ + +++ Ote100168710021\|100168710021 4 VQPASEHVCYVRCTFCNTVLAVGIPCKRLLDTLTVKCGHCSNLSFLSTKPQPQG-HCYDH-----------QTTLHYQAFC 72 5679***********************************9855333332222.22222...........2334444444 PP YABBY 84 snvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +k +sas+s s++++ +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + Ote100168710021\|100168710021 73 NEFKKGQSASSSS-----STSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 147 4333333333333.....3455667899999*********************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-53	7	147	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-9	91	145	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-5	101	146	IPR009071	High mobility group box domain
CDD	cd01390	6.15E-6	108	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDLVQPASEH VCYVRCTFCN TVLAVGIPCK RLLDTLTVKC GHCSNLSFLS TKPQPQGHCY 60 DHQTTLHYQA FCNEFKKGQS ASSSSSTSSE PLSPKAPFVV KPPEKKHRLP SAYNRFMKEE 120 IQRIKAANPE IPHREAFSAA AKNWARYIPN TPQASGSGSI NKS

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263611.1	5e-87	PREDICTED: protein CRABS CLAW isoform X2
Refseq	XP_010650015.1	6e-87	PREDICTED: protein CRABS CLAW isoform X1
Swissprot	Q76EJ0	8e-64	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	A0A4D8YP45	1e-101	A0A4D8YP45_SALSN; Uncharacterized protein
TrEMBL	A0A4D9A9N0	1e-101	A0A4D9A9N0_SALSN; Uncharacterized protein
STRING	VIT_01s0011g00140.t01	2e-86	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5210	23	39