PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100166030101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 408aa MW: 45361.5 Da PI: 6.9813

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100166030101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.3	3.7e-19	185	222	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+ Ote100166030101\|100166030101 185 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQ 222 58************************999****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.4E-19	170	222	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-17	178	227	IPR003657	WRKY domain
PROSITE profile	PS50811	18.337	180	222	IPR003657	WRKY domain
SMART	SM00774	3.9E-18	185	243	IPR003657	WRKY domain
Pfam	PF03106	1.2E-16	186	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MKEDLAMACK VDDDQEKLNI EETLKCDENH AVKEEEVNEM REENLRLKTL LQQIESDYKS 60 LQKKLIDAFK QESSKSGGKI PTRNPTAEEI DHEDQELVSL RLGTSSNEAK KEEFLHVRGS 120 SKSGGSIDQD DRSAKADLAT SKEEERWSPG KAVKTQRSNG DDEVSQTSVK RARVCVRARC 180 DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPTCPVR KQPSPAAAPP LINLYGQPTF 240 HPSNXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSPPTN PRFPATNLSF 300 SSMDSTMAPP AWGGAAQPLL LGRTDQQQKY NEPHVANLNQ SSSQQDLTET LTKVISSDPS 360 FRSAIAAVFS KMAANGGARK IDGGEINLVS SSQWREQVPA ADPACNFK

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MKEDLAMACK VDDDQEKLNI EETLKCDENH AVKEEEVNEM REENLRLKTL LQQIESDYKS  60
LQKKLIDAFK QESSKSGGKI PTRNPTAEEI DHEDQELVSL RLGTSSNEAK KEEFLHVRGS  120
SKSGGSIDQD DRSAKADLAT SKEEERWSPG KAVKTQRSNG DDEVSQTSVK RARVCVRARC  180
DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPTCPVR KQPSPAAAPP LINLYGQPTF  240
HPSNXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSPPTN PRFPATNLSF  300
SSMDSTMAPP AWGGAAQPLL LGRTDQQQKY NEPHVANLNQ SSSQQDLTET LTKVISSDPS  360
FRSAIAAVFS KMAANGGARK IDGGEINLVS SSQWREQVPA ADPACNFK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098771.1	1e-90	probable WRKY transcription factor 72
Swissprot	Q9LXG8	4e-46	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A2G9HFK4	4e-66	A0A2G9HFK4_9LAMI; Uncharacterized protein
STRING	evm.model.supercontig_14.32	2e-52	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12805	19	21