PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100165240031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31502.3 Da    PI: 6.2459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100165240031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-1882135356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ote100165240031|100165240031  82 KKRRLNMEQVKTLEKNFELGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 135
                                   456899***********************************************9 PP
2HD-ZIP_I/II128.23.5e-4181172192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqvk+LE++Fe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+ene L+
  Ote100165240031|100165240031  81 EKKRRLNMEQVKTLEKNFELGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFEAVKAENEGLH 161
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++L++++ 
  Ote100165240031|100165240031 162 SQNHKLQAQIL 172
                                   *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-1975139IPR009057Homeodomain-like
PROSITE profilePS5007116.97377137IPR001356Homeobox domain
SMARTSM003896.6E-1880141IPR001356Homeobox domain
CDDcd000869.88E-1682138No hitNo description
PfamPF000462.9E-1582135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1884144IPR009057Homeodomain-like
PRINTSPR000311.6E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5117133IPR000047Helix-turn-helix motif
PfamPF021839.2E-14137177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTSAEMAFFH SNFMLQIPHQ DEHNQPSTSL APILPPQDFH GVGSLLGKRG PRIAGMELCE  60
EEINNNTGDE DLSDDGSQIG EKKRRLNMEQ VKTLEKNFEL GNKLEPERKI QLARALGLQP  120
RQIAIWFQNR RARWKTKQLE KDYELLKRQF EAVKAENEGL HSQNHKLQAQ ILSLKNREPT  180
ESINLNKETE GSCSNRSENS SEIKLDISTN PAIDSPHPPA AGRPLFPSSL RGNAQQLFHN  240
SSKMEQTIKE ESLCNMFCGM DDQTGFWPWL DQQHFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-156homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-121ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL11e-150A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGVIT_01s0026g01950.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]