PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100162540041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 666aa MW: 74437.9 Da PI: 8.6013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100162540041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+ F ++ n++rHir+H Ote100162540041\|100162540041 77 KCEKCSWEFCSPINYRRHIRVH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.538	76	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0072	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MPAAKLCSSG TLNAMKSEEG NDSLDSFIRQ AIGKEPLLPF PRTVDSPVQW IQLLHALDQP 60 DLPGWPLLTP VKVQMQKCEK CSWEFCSPIN YRRHIRVHRR SLNLNKEWHK NRDLLGAFWD 120 KLLLEQAREV TSFNDIMLKD ISGSSVVKAL SSSLRRPGVW SLPQAYVKAG ATLLDIIQAK 180 PSRLPISSQD LFSILDNASE KTFLCAGTAE SVQKYVFDGE TAKNSLELKN LVALTSFLFE 240 QLLVNAWVAH KDAEALRCQK LLVEEEEAAH KRQALLLERK KQKKLRQKEQ KVREQYYGCS 300 GDLNVYADAL DRPNSNEAFG VSSPSSSNSN SQDVPTTLDS VEPQKRESDE DIEAQFDVSI 360 EHKKQVDSSG ELPMVGAYSH RHVATNRLQV PKSQRSSRYG LHANLNLQTS KPEPMLKLGP 420 STDRSSQNVH KVWTKKLKSN NDGEKLRPPS QEVTSHQIEQ NNEVIIGSIP VTLKSYIDQQ 480 QESFPSEASN VFSTEHVVLK KKNASEKRVA LKLWRPVIRG ETKDVPPVGR SNNDHENGAV 540 LSEAHECTPA SERSGHSQSS GSDGCHNGKQ FLSNDFAQRG FLPFSSEAAK EFLARRWKEA 600 ISGDHIKLVL SSGHEPPDVE HASDPPSSND PSHADNQFGR TIQVHVTRKP EKSVKLKYIP 660 KQKAAA

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MPAAKLCSSG TLNAMKSEEG NDSLDSFIRQ AIGKEPLLPF PRTVDSPVQW IQLLHALDQP  60
DLPGWPLLTP VKVQMQKCEK CSWEFCSPIN YRRHIRVHRR SLNLNKEWHK NRDLLGAFWD  120
KLLLEQAREV TSFNDIMLKD ISGSSVVKAL SSSLRRPGVW SLPQAYVKAG ATLLDIIQAK  180
PSRLPISSQD LFSILDNASE KTFLCAGTAE SVQKYVFDGE TAKNSLELKN LVALTSFLFE  240
QLLVNAWVAH KDAEALRCQK LLVEEEEAAH KRQALLLERK KQKKLRQKEQ KVREQYYGCS  300
GDLNVYADAL DRPNSNEAFG VSSPSSSNSN SQDVPTTLDS VEPQKRESDE DIEAQFDVSI  360
EHKKQVDSSG ELPMVGAYSH RHVATNRLQV PKSQRSSRYG LHANLNLQTS KPEPMLKLGP  420
STDRSSQNVH KVWTKKLKSN NDGEKLRPPS QEVTSHQIEQ NNEVIIGSIP VTLKSYIDQQ  480
QESFPSEASN VFSTEHVVLK KKNASEKRVA LKLWRPVIRG ETKDVPPVGR SNNDHENGAV  540
LSEAHECTPA SERSGHSQSS GSDGCHNGKQ FLSNDFAQRG FLPFSSEAAK EFLARRWKEA  600
ISGDHIKLVL SSGHEPPDVE HASDPPSSND PSHADNQFGR TIQVHVTRKP EKSVKLKYIP  660
KQKAAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076143.1	0.0	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548920.1	0.0	uncharacterized protein LOC105160463 isoform X1
TrEMBL	A0A4D9BG75	0.0	A0A4D9BG75_SALSN; Uncharacterized protein
STRING	Migut.F00325.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28