PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100161550092
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 352aa    MW: 39755.7 Da    PI: 7.9507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100161550092genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1789135148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W++eEd ll+++v  +G + W+ Ia+ ++ gR +kqc++rw+++l
  Ote100161550092|100161550092  89 KGPWSKEEDGLLIELVGAFGEKKWSEIAEQLP-GRMGKQCRERWYNHL 135
                                   79******************************.*************97 PP
2Myb_DNA-binding54.33.2e-17143183345
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   +WT+eE+ +l++a++++G++ W+  a+ ++ gRt++++k++w+
  Ote100161550092|100161550092 143 AWTEEEERILINAHAEYGNK-WSILAKLLP-GRTENSVKNHWN 183
                                   8*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717534985IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-75297IPR009057Homeodomain-like
PROSITE profilePS500904.2175983IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.4E-1261100IPR009057Homeodomain-like
PROSITE profilePS5129430.11284139IPR017930Myb domain
SuperFamilySSF466891.44E-3186182IPR009057Homeodomain-like
SMARTSM007172.7E-1788137IPR001005SANT/Myb domain
PfamPF002497.6E-1789135IPR001005SANT/Myb domain
CDDcd001673.77E-1491135No hitNo description
Gene3DG3DSA:1.10.10.607.9E-28101143IPR009057Homeodomain-like
SMARTSM007171.1E-16140188IPR001005SANT/Myb domain
PROSITE profilePS5129420.985140190IPR017930Myb domain
PfamPF002491.8E-15142183IPR001005SANT/Myb domain
CDDcd001673.33E-12143183No hitNo description
Gene3DG3DSA:1.10.10.605.8E-22144190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEEANCCKIE AEKEDGKSNR AVDADNDVDK PISVHGNLRR LSVPTRRSSK AKWTVEEVIS  60
AEVTGCLSGR SDVQCLHRWQ KVLNPELVKG PWSKEEDGLL IELVGAFGEK KWSEIAEQLP  120
GRMGKQCRER WYNHLKPEIN KAAWTEEEER ILINAHAEYG NKWSILAKLL PGRTENSVKN  180
HWNCSLKKRL FTHSSLPPQP NNRGANQDST EVNQTQNHGT TKTQTQGFTR VDDGDKASPS  240
SECSYTGLWY VPIQREDENI LLCSGKFPIK EAWDSYSITR AILRSAASSY RNMPSIIRRR  300
AFRLLQKGSD EGVGPLNGGD DAKKVDDEDR VRTCVFLSQM SEGFKSLQPL NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-566319032159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-566319032159MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094689.26e-74transcription factor MYB3R-5
TrEMBLA0A4D8XZ901e-107A0A4D8XZ90_SALSN; Uncharacterized protein
STRINGevm.model.supercontig_18.2082e-70(Carica papaya)