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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100161550092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 39755.7 Da PI: 7.9507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll+++v +G + W+ Ia+ ++ gR +kqc++rw+++l Ote100161550092|100161550092 89 KGPWSKEEDGLLIELVGAFGEKKWSEIAEQLP-GRMGKQCRERWYNHL 135 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 143 | 183 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE+ +l++a++++G++ W+ a+ ++ gRt++++k++w+ Ote100161550092|100161550092 143 AWTEEEERILINAHAEYGNK-WSILAKLLP-GRTENSVKNHWN 183 8*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 53 | 49 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.67E-7 | 52 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.217 | 59 | 83 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 61 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 30.112 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-17 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-17 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.77E-14 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-28 | 101 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 140 | 188 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.985 | 140 | 190 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-15 | 142 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-12 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 144 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MEEANCCKIE AEKEDGKSNR AVDADNDVDK PISVHGNLRR LSVPTRRSSK AKWTVEEVIS 60 AEVTGCLSGR SDVQCLHRWQ KVLNPELVKG PWSKEEDGLL IELVGAFGEK KWSEIAEQLP 120 GRMGKQCRER WYNHLKPEIN KAAWTEEEER ILINAHAEYG NKWSILAKLL PGRTENSVKN 180 HWNCSLKKRL FTHSSLPPQP NNRGANQDST EVNQTQNHGT TKTQTQGFTR VDDGDKASPS 240 SECSYTGLWY VPIQREDENI LLCSGKFPIK EAWDSYSITR AILRSAASSY RNMPSIIRRR 300 AFRLLQKGSD EGVGPLNGGD DAKKVDDEDR VRTCVFLSQM SEGFKSLQPL NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-56 | 63 | 190 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-56 | 63 | 190 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094689.2 | 6e-74 | transcription factor MYB3R-5 | ||||
TrEMBL | A0A4D8XZ90 | 1e-107 | A0A4D8XZ90_SALSN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_18.208 | 2e-70 | (Carica papaya) |