PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100159450141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 294aa MW: 33056.3 Da PI: 7.4607

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100159450141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.8	2.6e-29	83	141	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dpk++++tY eHnh+ Ote100159450141\|100159450141 83 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPKMLVVTYYCEHNHN 141 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-31	71	143	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-26	79	143	IPR003657	WRKY domain
SMART	SM00774	3.0E-35	82	142	IPR003657	WRKY domain
PROSITE profile	PS50811	32.214	83	143	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	84	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDNGFSRLRF ISELEEDSDN SPENSGGDSP RSAAVSADAK IASTSASSKR RRAIQKRVVQ 60 VPIRDVEGSR VNKSDQMSTP PPSDSWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV 120 ERSRVDPKML VVTYYCEHNH NWPAAKISHH KTAARNVKTP ISXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXN QSRDEVSVPE IKFNTNICEA PPMIHNAEFG WFADFDSTSF AMFESPMLIE 240 DGISTGTEPA MIFTEEDESF FADLGELPEC SAVFRRGLMP REAEQRRPGL ATTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	83	143	15	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101421.1	1e-103	probable WRKY transcription factor 65
TrEMBL	A0A0D5Y984	1e-121	A0A0D5Y984_SALMI; WRKY protein
STRING	XP_009595576.1	5e-86	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33