PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100149890041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 460aa    MW: 48349.4 Da    PI: 8.5383
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100149890041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-121843227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  +++ C +++rtG+C yG+rC+F+H++
  Ote100149890041|100149890041 18 DEPDCIYYLRTGFCGYGNRCRFNHPR 43
                                  6899********************96 PP
2zf-CCCH38.42.1e-126589327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                  +++C++++rtG Ck+G++Ck++H++
  Ote100149890041|100149890041 65 QPICQYYMRTGMCKFGASCKYHHPK 89
                                  799********************96 PP
3zf-CCCH35.31.9e-11110135227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++C+++ +tG+Ck+G +CkF+H++
  Ote100149890041|100149890041 110 GEKECSYYVKTGQCKFGVTCKFHHPQ 135
                                   7899********************97 PP
4zf-CCCH37.54e-12280306127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C+++++tG Ck+G++Ck++H+p
  Ote100149890041|100149890041 280 PGQPECQYYLKTGDCKFGATCKYHHPP 306
                                   5789*********************97 PP
5zf-CCCH36.86.6e-12328352327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    +lC+++a++G Ck+G++CkF H++
  Ote100149890041|100149890041 328 APLCSHYAQNGVCKFGPSCKFDHPM 352
                                   68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5581644IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-51643IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-91843IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-62044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-52243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7236290IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-76289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-66590IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-96589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-56788IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704108136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5110135IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4114134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826279307IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6279306IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5283306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4285306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309325353IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7325352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6328355IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MWQLGLSGGP ESYPERPDEP DCIYYLRTGF CGYGNRCRFN HPRDRGMGMG ALRAGGGEYP  60
ERVGQPICQY YMRTGMCKFG ASCKYHHPKQ GIGSSAPLAL NFYGYPLRPG EKECSYYVKT  120
GQCKFGVTCK FHHPQLPGTQ MPLPVPGPGP LTASGAVPTQ AVYPTGPSPS VQTSQQYGVI  180
QGNWPVARPA MLPGSYVPGS YGPMILPPGV VPVPGWTPYP APVSPAASPS NQPAVGAAPM  240
YGMTQLSPSA TGYTGPYLSV TSSAGPSSGS QKEQAFPERP GQPECQYYLK TGDCKFGATC  300
KYHHPPEWSA SKTNYVLSPM GLPLRPGAPL CSHYAQNGVC KFGPSCKFDH PMRTLSYSPS  360
ASSLTDMPVA PYPVGSTIAT LAPSSSSSDL RPDRLSGLST EAMSSQMSSM SSSASASVGS  420
IFSKTGALPQ SNVEQQSGQG SISSSGGSSV SHGGETHTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-156C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A4D8Z7M80.0A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]