PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Ote100148620031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 231aa MW: 26944.4 Da PI: 6.7324

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100148620031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+ eEd ll+++++ +G g+W+ +ar+ g++Rt+k+c+ rw +yl Ote100148620031\|100148620031 13 RGTWSSEEDSLLINYIAVHGEGRWNDVARYSGLNRTGKSCRFRWKNYL 60 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.3	8	64	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-21	10	63	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-16	13	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.21E-23	14	91	IPR009057	Homeodomain-like
CDD	cd00167	1.61E-11	15	60	No hit	No description
PROSITE profile	PS50090	5.808	61	116	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.7E-10	64	93	IPR009057	Homeodomain-like
SMART	SM00717	1.8	65	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDAKEETVSS LKRGTWSSEE DSLLINYIAV HGEGRWNDVA RYSGLNRTGK SCRFRWKNYL 60 QPNVRRGNFT VAEQLRIAEL HCLYGNRWSK IAEFXXXXXX XXXXXXXXTR VHKRAKQLEY 120 DTTGVELREF VRDIWLPTLS QQIHASPCNN NNLGNIVTKN FQGGSEALQM NCWSHDFSCE 180 ADQVKLNHHE FEFHDHIASE LDFRQHYYDL HSPYIGCSDS SAWFNGEFSN I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-15	9	94	23	107	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107921.1	2e-47	transcription factor MYB108-like
TrEMBL	A0A059PRK7	1e-64	A0A059PRK7_SALMI; MYB-related transcription factor
STRING	XP_006492457.1	2e-46	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24712	2	2