PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100148290131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 786aa    MW: 87873.1 Da    PI: 9.1669
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100148290131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.66.2e-37152228278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   Cqv+gCead+se+k yh+rh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L+khn+rrr+k++
  Ote100148290131|100148290131 152 CQVPGCEADISELKGYHKRHRVCLKCAHAATVVLDGETKRYCQQCGKFHLLSNFDEGKRSCRRKLEKHNDRRRRKST 228
                                   *************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-29148213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.214149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.26E-33150229IPR004333Transcription factor, SBP-box
PfamPF031105.2E-28152226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
SRVFLKSLQI IAFRRRQIKW SRIRRRRFRA QSTYPETSTR PNLPYSIGPI SSXXXXXXXX  60
XXEALNTPIA ISEPGSGPDQ EPGSDKSQRS ESVGQVRKRD PRLLCPNFVA GMXXXXXXXX  120
XXXXXXXXXX EEESALPGKK RTRTAAGGPL LCQVPGCEAD ISELKGYHKR HRVCLKCAHA  180
ATVVLDGETK RYCQQCGKFH LLSNFDEGKR SCRRKLEKHN DRRRRKSTES KGGTEKEPQR  240
VVSSDDVKED DDGEKDGTSP SSHIEEAEVL LKSDRHGSAV SSGPGSQTFM GEKVTSIAVP  300
GELYVNGHNK HSPNSKRSAS YSDNFSSVCP TGRISFKLYD WNPAEFPRRL RLQIFEWLAS  360
MPIELEGYIR PGCTILTAFI AMPKPMWLKH PCLKQLLDKP ASYIKDLVGS PGNMLSGKGT  420
MLVYVNDMIF RVTKDAHSVV QVGIKDRSPK LHYIYPTCFE AGRPMEFVAC GSDLLQPKFR  480
FLVSCAGRYM AYNICVSSLC CKDGESNNFN HQLVKISVPQ TDMNLSGPAF IEVENQSGLS  540
NFIPIFVGDK EICVEMEILQ QKFDTSVSSV EQPVMPRRPP CEVLASRQIR FSGFLLDLAW  600
SLKKPTPEQL LTSLHIQRFN CLLDFLMEKG SYAILERVFC SLKYSVDNNA IAGVSDSDIR  660
SLRAKMVIVQ DMLDRGKKEK GPAAMSACQS SQIENQFVFL AAKTGVGEKV EEATPLMKGG  720
EVVMNVNFDA RPKKPSSLII RHTFLSSRSH IMAIGAVCVC LGVCVAVFHP QRVNQIATTI  780
RRCLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A5e-39147234187squamosa promoter binding protein-like 7
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090876.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A075FJN60.0A0A075FJN6_SALMI; SQUAMOSA promoter binding protein-like 4 (Fragment)
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433