PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100143260091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 464aa    MW: 52001.3 Da    PI: 4.5853
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100143260091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36101012102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+y++++d+++++++sws ++nsf+v+d+ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100143260091|100143260091  10 FLVKTYDMVDDPSTDKIVSWSPTNNSFIVWDSAEFGRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 81 
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+k+ll++i+r+k 
  Ote100143260091|100143260091  82 NEGFLRGQKHLLKTINRRKP 101
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-39394IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-35599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-63699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MPTANAPPPF LVKTYDMVDD PSTDKIVSWS PTNNSFIVWD SAEFGRDLLP KYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKTINRRK PAHGHPQHQQ QPNGQTPAVG  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDG QLQTMVQRLQ GMEQRQQQMM  180
SFLAKAMNSP GFLAQFMQQP NDSSRRVTEG NKKRRLKQDD GSDDSVSPSD GQIIKYQPLM  240
NEAAKAMLRQ IMKLESSPRL ENFGNPSDNF LIGDRSSPSN ALECGSSPNN ISGVTLQEVP  300
QTTGPGFVPP VSAIMSSSSA AISEVQTPSI RPCTEVADAI MPELSHIVPE SIVDIMGPET  360
GNDVFIDPEE GDKIPFEIGG FSPDPQIEWE NMDEMPELPS VSDPFWEKFL QSPPPVDTEM  420
HSTLTEDLPE GNETNALENV WDKTQHMAQL TEQMGLLSQE AKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2829918129Heat shock factor protein 1
5d5v_B4e-2829918129Heat shock factor protein 1
5d5v_D4e-2829918129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070307.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2G9HZ860.0A0A2G9HZ86_9LAMI; Heat shock transcription factor
STRINGXP_009600492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]