PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100140410032
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 278aa    MW: 30131.7 Da    PI: 8.9185
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100140410032genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.45.2e-10161180120
                          GATA   1 CsnCgttkTplWRrgpdgnk 20 
                                   Cs C+ttkTplWR+gp g+k
  Ote100140410032|100140410032 161 CSDCHTTKTPLWRSGPKGPK 180
                                   ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.631155178IPR000679Zinc finger, GATA-type
SMARTSM004018.8E-5155194IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-5155179No hitNo description
Gene3DG3DSA:3.30.50.102.6E-7159178IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-7161180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNLGFPPSPF PMEQMNQHEH DQHHPAFSFG LNQQFVSSSS SSSASCHIFF NSTTQDHSAF  60
YHPQLYQPHH HTQDEYYGYH GGSSYEMENK VENGLKLSLW KKEDEVVATK DGDRVVKWMA  120
NKGDGIAGGN NEVKKVKMKP SCSLETDVSS NSSSYSPIRV CSDCHTTKTP LWRSGPKGPK  180
ARRAMAAAGS GGGGVSDAAK VKEKMGKSGN SSQLKKRCKV AATAGGGGGS SNSSEKKMGF  240
EDFLINLSNK IAFHRVFPQD EKEAAILLMA LSSGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.28e-79LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A2G9GSX19e-81A0A2G9GSX1_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000114491e-52(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249