PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100135980061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 291aa    MW: 33092.4 Da    PI: 8.0223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100135980061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042212234123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp C++ Fs+   L  H r+H
  Ote100135980061|100135980061 212 HQCPFCDRIFSSGQALGGHKRSH 234
                                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471167194IPR007087Zinc finger, C2H2
PfamPF139123.0E-10167191IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-8167234No hitNo description
SMARTSM003550.12167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
PfamPF139125.7E-9211234IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411212234IPR007087Zinc finger, C2H2
SMARTSM003550.019212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRSHMMKFYA QDNETGEYEX XXXXXXXXXX XXXXXXXXEE EYELGENPRK SAVLVDRESE  60
TESSKLTLNK SICRRSKRVR KSKISDFDLL VVKKTKFENE QSSPLSSISD TTPEEHVAHC  120
LIMLSRDKWE KEEREYLRPX XXXXXXXXIC EDSGVAKMIR NKFRGKYRCE ACNKLFRSYQ  180
ALGGHRASHK KIKSPAPEKN GGLKAAEEPK THQCPFCDRI FSSGQALGGH KRSHFVGANA  240
ITTNCSTIIS QSSRIAQVLN IDLNLPAPVD DDESSQIAIS TVSDAEFLHP H
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090203.12e-91zinc finger protein ZAT4
TrEMBLA0A4D8Y5H93e-91A0A4D8Y5H9_SALSN; Uncharacterized protein
STRINGMigut.B01588.1.p3e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480