PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134910121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 289aa    MW: 31772.8 Da    PI: 4.952
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134910121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.8e-15210238634
                          GATA   6 ttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   t+kTp+WR gp g+ktLCnaCG+++++ +
  Ote100134910121|100134910121 210 TKKTPQWRAGPMGPKTLCNACGVRFKSGR 238
                                   899***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.4E-9199249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-11209236IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.6E-13209238IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-10210262No hitNo description
CDDcd002022.57E-9214251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRRLTPALWK FCELSVEVME PELMDEIDCG NFFDQIDDLI EFPSDNECDD ANIVSSSDCK  60
DFPTWDEALQ DSDPLFSGSS ASEFAAELSV PYEDIVQLEW LSTFVEDSFS GVGLTLGKEN  120
LRAKNDSSSH IEFLTTSPVS VLEXXXXXXX SSSSIDKTTP LSHGPQRARS KRPRPSTFNP  180
RSAIQLISPS SSSASESNNF AESSPAKKKT KKTPQWRAGP MGPKTLCNAC GVRFKSGRLF  240
PEYRPAASPT FVPALHSNSH KKVLEMRVKL EPATAPTAAE TKVFAHASP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022890097.11e-111GATA transcription factor 8-like
RefseqXP_022890098.11e-111GATA transcription factor 8-like
TrEMBLA0A4D8ZQU91e-120A0A4D8ZQU9_SALSN; Uncharacterized protein
STRINGXP_009760862.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358