PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100132970021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 1613aa MW: 177414 Da PI: 6.2877

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100132970021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	8.9e-11	822	863	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el++d + +G++ +++Ia+ + ++t +c+++++k Ote100132970021\|100132970021 822 PWTAEERELFIDKLAIYGKN-FSKIASFLE-HKTIAHCIEFYYK 863 8***************99.*****.*********98 PP
2	Myb_DNA-binding	28.4	3.8e-09	1037	1077	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I++++ +R+ qck ++ Ote100132970021\|100132970021 1037 DWTDEEKSVFIHAVSSYGKD-FAMISQRLR-TRSKDQCKIFFS 1077 6***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-14	806	867	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-6	814	863	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.621	818	869	IPR017884	SANT domain
SMART	SM00717	3.1E-9	819	867	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-7	821	863	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.593	1033	1084	IPR017884	SANT domain
SMART	SM00717	2.4E-7	1034	1082	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.82E-10	1035	1084	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	1037	1076	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	1037	1078	IPR009057	Homeodomain-like
CDD	cd00167	3.33E-6	1038	1076	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1613 aa Download sequence Send to blast
MPPEQFPWDR RDFRKHERSG SDPRFGGGGF GGGGPHRWRE XXXXXXXXXX XXXXXXXXXX 60 XXXRWYSDFR SSRPIPPGHG KQGGWQMYPD DAGHGFIPFT SRYGDRNLED ENFRPFGNRG 120 EGRYFRNSRE SRGSFSQRDW RSPSWEPAAS SSGPGRPTSE VNNQKPVENT KTCHDNSSKS 180 NGTANPPPDS LPGQSXXXXX XXXXXXXSSE KGGDGANELV SPGQKSEKEN GLGSVDWKPL 240 KWSRSGSLSS RGSGFSHSSS SKSMAVDSEV VVDAPQKDVT AFQAPADGCA VPAATPAPSD 300 ETSSRKKPRL GWGEGLAKYE KKKIDGPEEV ATKDGLLVNV GDAEIMQSPS VHLLEKSPRV 360 ASFSDCTESA TPTSVACSSS PGIEEKESVK AVDTDRDAAN WSCSPSAMSK AQYDGPPFNL 420 ENLELVSIAN LRSLINELVQ SDDPSSLETG YVRNTAMNKL SVWKVNILKA IEVTESEIDL 480 LETELKSLAA EGPAASSLLP GECHSKPCEL VAGSSFTAGS VPLEAVSSEA MNFENLHGDG 540 HVALKDEIDS PGSATSKLTE MLPSGEDNFP SESQQCVECS TRLNRDNFHN LGKCLEDGVS 600 NQDETCCSDD HKLIEASCHN IAGVGDAHSK IDRVYHSILS SNKYSAKMAV EELNKLLPDH 660 QSFPDISTLL SASSFPSDPL LIKEKFLKKK RTLRIREKIV TLKFKVFQHF WKEGRVVSIR 720 KLQGKSHKKL DLSHTGGFKK NRSSSRARIS YSGGCIRTVP AEEVIDYAKR LLSESPFKPC 780 RTTLKMPALI LDKDIRMSRF ITNNALVEDP CAVEKERSMI NPWTAEEREL FIDKLAIYGK 840 NFSKIASFLE HKTIAHCIEF YYKNHKSEYF ERARKKPDFA KHKKSQSSTY LIGSGKRWNR 900 EANAASLDIL GEASVIVASV NDGIETQQKS ISRMFFGASS SRKVPRGEDA PLQRSNSVDM 960 YNNETVAADV LAGICGSLSS EAMSSCTTSS VDRIDGHQER KSQRVGSCVK RPMTPDVMEN 1020 VDDEGSDESC GEMDPSDWTD EEKSVFIHAV SSYGKDFAMI SQRLRTRSKD QCKIFFSKAR 1080 KCLGLDKIQP GISNAVSANG NGGASDTEDA CVVQTCCITG NDGSECRREE DLPPAETTTI 1140 DDTNISGTHS LEPDFNGCPD ESGPPILDSV AAEPFLKDSS MDIPLMDDNS AIDVNVNGEE 1200 GASGRESEVT TSVVSSRNDC VGVKRGDHGD QPTVLSETDS KAMASDGHHR EDNEGRRSIE 1260 PEDNLENKNN GASSTEESSI LFSVPIKYQR HSSTNALSNG CTNGISEKDS QKIVRTVDRQ 1320 QHIPVYSRSD PNEFSHILKG YPVSVQTLKE INGDISKRHV ALNNVSKHDE KLHSDRHRDF 1380 SLQKCAGPKH QGEVQAPFTS QDKSRDHSRP RSARSSEVEK PPRNGDVKLF GKILTSSQQK 1440 PDSCLDGKGA DDQNKSGCKT LNLRFMGDQK VSLDSSESKF DCNNYISTEN PSSYSFWDGN 1500 RTSTGFTHLP DSALLLTKYP AAFSNHLMPS VKLDQPPLHG VMRSNDPSLN GLSVFPNSSS 1560 NGVADYHVSR NRELPPFSLD MKQPQDLLFL EMQRRNGQAM ELEKMMLGKL MVM

Sequence ? help Back to Top

Protein Sequence Length: 1613 aa Download sequence Send to blast

MPPEQFPWDR RDFRKHERSG SDPRFGGGGF GGGGPHRWRE XXXXXXXXXX XXXXXXXXXX  60
XXXRWYSDFR SSRPIPPGHG KQGGWQMYPD DAGHGFIPFT SRYGDRNLED ENFRPFGNRG  120
EGRYFRNSRE SRGSFSQRDW RSPSWEPAAS SSGPGRPTSE VNNQKPVENT KTCHDNSSKS  180
NGTANPPPDS LPGQSXXXXX XXXXXXXSSE KGGDGANELV SPGQKSEKEN GLGSVDWKPL  240
KWSRSGSLSS RGSGFSHSSS SKSMAVDSEV VVDAPQKDVT AFQAPADGCA VPAATPAPSD  300
ETSSRKKPRL GWGEGLAKYE KKKIDGPEEV ATKDGLLVNV GDAEIMQSPS VHLLEKSPRV  360
ASFSDCTESA TPTSVACSSS PGIEEKESVK AVDTDRDAAN WSCSPSAMSK AQYDGPPFNL  420
ENLELVSIAN LRSLINELVQ SDDPSSLETG YVRNTAMNKL SVWKVNILKA IEVTESEIDL  480
LETELKSLAA EGPAASSLLP GECHSKPCEL VAGSSFTAGS VPLEAVSSEA MNFENLHGDG  540
HVALKDEIDS PGSATSKLTE MLPSGEDNFP SESQQCVECS TRLNRDNFHN LGKCLEDGVS  600
NQDETCCSDD HKLIEASCHN IAGVGDAHSK IDRVYHSILS SNKYSAKMAV EELNKLLPDH  660
QSFPDISTLL SASSFPSDPL LIKEKFLKKK RTLRIREKIV TLKFKVFQHF WKEGRVVSIR  720
KLQGKSHKKL DLSHTGGFKK NRSSSRARIS YSGGCIRTVP AEEVIDYAKR LLSESPFKPC  780
RTTLKMPALI LDKDIRMSRF ITNNALVEDP CAVEKERSMI NPWTAEEREL FIDKLAIYGK  840
NFSKIASFLE HKTIAHCIEF YYKNHKSEYF ERARKKPDFA KHKKSQSSTY LIGSGKRWNR  900
EANAASLDIL GEASVIVASV NDGIETQQKS ISRMFFGASS SRKVPRGEDA PLQRSNSVDM  960
YNNETVAADV LAGICGSLSS EAMSSCTTSS VDRIDGHQER KSQRVGSCVK RPMTPDVMEN  1020
VDDEGSDESC GEMDPSDWTD EEKSVFIHAV SSYGKDFAMI SQRLRTRSKD QCKIFFSKAR  1080
KCLGLDKIQP GISNAVSANG NGGASDTEDA CVVQTCCITG NDGSECRREE DLPPAETTTI  1140
DDTNISGTHS LEPDFNGCPD ESGPPILDSV AAEPFLKDSS MDIPLMDDNS AIDVNVNGEE  1200
GASGRESEVT TSVVSSRNDC VGVKRGDHGD QPTVLSETDS KAMASDGHHR EDNEGRRSIE  1260
PEDNLENKNN GASSTEESSI LFSVPIKYQR HSSTNALSNG CTNGISEKDS QKIVRTVDRQ  1320
QHIPVYSRSD PNEFSHILKG YPVSVQTLKE INGDISKRHV ALNNVSKHDE KLHSDRHRDF  1380
SLQKCAGPKH QGEVQAPFTS QDKSRDHSRP RSARSSEVEK PPRNGDVKLF GKILTSSQQK  1440
PDSCLDGKGA DDQNKSGCKT LNLRFMGDQK VSLDSSESKF DCNNYISTEN PSSYSFWDGN  1500
RTSTGFTHLP DSALLLTKYP AAFSNHLMPS VKLDQPPLHG VMRSNDPSLN GLSVFPNSSS  1560
NGVADYHVSR NRELPPFSLD MKQPQDLLFL EMQRRNGQAM ELEKMMLGKL MVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-17	786	871	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-17	786	871	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834923.1	0.0	PREDICTED: uncharacterized protein LOC105955688
TrEMBL	A0A4D8ZAK0	0.0	A0A4D8ZAK0_SALSN; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32