PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100132910021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LSD
Protein Properties Length: 1117aa    MW: 118937 Da    PI: 8.0014
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100132910021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1382.6e-12903927125
                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                   C+gCrt+L YPrGA++V+Ca+C+ V
  Ote100132910021|100132910021 903 CSGCRTVLLYPRGATNVCCAICNVV 927
                                   ***********************98 PP
2zf-LSD135.81.3e-11942966125
                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                   CggCrtlL+  rGA sVRC++C+tV
  Ote100132910021|100132910021 942 CGGCRTLLMHARGAASVRCSCCHTV 966
                                   ************************9 PP
3zf-LSD145.81e-149911015125
                       zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                                    Cg+C+t+L+YP+GApsV+Ca+C+++
  Ote100132910021|100132910021  991 CGNCHTMLMYPAGAPSVKCAICHFI 1015
                                    ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059221.6E-1835189IPR010259Peptidase S8 propeptide/proteinase inhibitor I9
Gene3DG3DSA:3.40.50.2007.8E-73164235IPR000209Peptidase S8/S53 domain
SuperFamilySSF527438.9E-72189234IPR000209Peptidase S8/S53 domain
CDDcd048522.24E-112189695No hitNo description
PRINTSPR007238.7E-20214233IPR015500Peptidase S8, subtilisin-related
PfamPF000829.0E-45214700IPR000209Peptidase S8/S53 domain
PROSITE patternPS001360219230IPR023827Peptidase S8, subtilisin, Asp-active site
SuperFamilySSF527438.9E-72263467IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2007.8E-73277428IPR000209Peptidase S8/S53 domain
PRINTSPR007238.7E-20294307IPR015500Peptidase S8, subtilisin-related
CDDcd021201.19E-12438575No hitNo description
Gene3DG3DSA:3.40.50.2007.8E-73600739IPR000209Peptidase S8/S53 domain
SuperFamilySSF527438.9E-72603740IPR000209Peptidase S8/S53 domain
PRINTSPR007238.7E-20658674IPR015500Peptidase S8, subtilisin-related
PROSITE patternPS001380659669IPR023828Peptidase S8, subtilisin, Ser-active site
TIGRFAMsTIGR010531.5E-11900930IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-10903927IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-14939969IPR005735Zinc finger, LSD1-type
PfamPF069432.8E-10942966IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.102.6E-49551013No hitNo description
TIGRFAMsTIGR010539.1E-129881016IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-139911015IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MEGRWGVGFF GVMVCLGVLV GWSFAHSDVD NATAVYIVAL KQAPISHIYG EVKVKQGHHI  60
KRNESEGMNR FDKPSELAIV ISELAIGEKM LCNLIGIGKI WKCRKMKLIS LHYAETRNTS  120
RTDRRRSYTD RAHDSLLRKV LRGENYLKLY SYRFLINGFA VLVTPTQAYK LSKRREVSNV  180
VLDFKVRTAT THTPQFLGLP QGAWAQEGGF EEAGEGVVIG FIDTGIDPTH PSFSDDAPEK  240
LYPIPQHYSG ICEVTPDFPS GSCNRKLVGA RHFAASAITR GIFNATQDYA SPFDGDGHGT  300
HTASTAAGNH GIAVVAAGHH FGNASGMAPR SHIAVYKALY KSFGGFAADV VAAIDQAAQD  360
GVDIISLSIT PNRRPPGIAT FFNPIDMALL SAVKAGIFVV QAAGNTGPSP KSISSFSPWI  420
FTVGAAAHDR VYRNSIFLGN NVTISGVGLA PGTDQDLMYK LVSAIHALNA SSAKNDMYVG  480
ECQDVGNFNK SVVEGNLLIC SYSIRFVLGL STIKRALETA KNLGAAGVVF YMDPYVIGFQ  540
LNPIPMRIPG IIIPSPDDSK VLLHYYNSTL ERDGSSKKIV KFGGLASISG GIKPNFGHTA  600
PKIMYYSARG PDPEDSFLDD ADILKPNVVA PGNFIWSAWS SRGTDSVEFL GENFAMMSGT  660
SMAAPHIAGL AALIKQRFPS FSPAAIGSAL STTASLNDKN GGPIMAQRAY TNPDVNQSPA  720
TPFDMGSGFV NATAALDPGL ILDSSYDDYV SFLCGINGSS PVVMNYTGAS CGGPTLNATG  780
LNLPSITISK LHGSATLQRV VTNVGSNETY SIGWSAPYGA SLKVVPTHFS IGSGEKQVLS  840
VVISANINSS VASFGRIGLF GTRGHVIEVV FFSLTGRVYA TALALSVDPL SLCERDMQSQ  900
LICSGCRTVL LYPRGATNVC CAICNVVTAV PPAGMEMVQL ICGGCRTLLM HARGAASVRC  960
SCCHTVNLVP APAAAAAAPP PAHNNIAHVN CGNCHTMLMY PAGAPSVKCA ICHFITNSNI  1020
GDTRVPIPVH RPSGISTSAL TPTYPVPHSH NQTVVVQNPM TVDESGKLVS VDPSYSTANT  1080
SSLFMDIHNL LSSSLQMAMC DLCLLQGYRD ILCIFWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3i6s_A3e-691908431610Subtilisin-like protease
3i6s_B3e-691908431610Subtilisin-like protease
3i74_A3e-691908431610Subtilisin-like protease
3i74_B3e-691908431610Subtilisin-like protease
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096735.10.0subtilisin-like protease SBT2.2
SwissprotQ9SUN60.0SBT22_ARATH; Subtilisin-like protease SBT2.2
TrEMBLA0A4D9B1P80.0A0A4D9B1P8_SALSN; Uncharacterized protein
STRINGMigut.M01939.1.p0.0(Erythranthe guttata)
Publications ? help Back to Top
  1. Beers EP,Jones AM,Dickerman AW
    The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis.
    Phytochemistry, 2004. 65(1): p. 43-58
    [PMID:14697270]
  2. Rautengarten C, et al.
    Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family.
    PLoS Comput. Biol., 2005. 1(4): p. e40
    [PMID:16193095]
  3. Tripathi LP,Sowdhamini R
    Cross genome comparisons of serine proteases in Arabidopsis and rice.
    BMC Genomics, 2006. 7: p. 200
    [PMID:16895613]