PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100127330141
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 358aa    MW: 40910 Da    PI: 5.1055
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100127330141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.5e-36331252103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+++ede+++e++ ws+ +nsf+v+d+++fa ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100127330141|100127330141  33 FLSKTYDLVEDESTNEIVCWSRGNNSFIVWDPQTFAINLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFA 104
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F +g+++ll++i+r+k++
  Ote100127330141|100127330141 105 NEGFLRGQRHLLKNIRRRKTS 125
                                   ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3829122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-6129122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3529122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERFGFVKEE ELEKGCNIPQ AMEGLHETGP PPFLSKTYDL VEDESTNEIV CWSRGNNSFI  60
VWDPQTFAIN LLPKYFKHNN FSSFVRQLNT YGFRKVDPDK WEFANEGFLR GQRHLLKNIR  120
RRKTSSNSNP LSTLSFSTSK QSGILESCVE VGRFGLDVKI DRLRRDKNVL MVELVKLRQQ  180
QQNTKAYLQA MEKRLTGSEL KQQQTMTFLA RAIRNPTFFQ QMVQQKEMRK EIEQEIGKKR  240
RKQIDHGSTS VGVEGDHQTY ISFGGGDDLG PFEGGDIFVK DEPQELDKFD DVGTLGNMVS  300
PTTECVDQEW FNGTKEKPLD QGFWEGLMNE GFGVEGVFGD EGVDVLSQQL GFLDSNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-28121248131Heat shock factor protein 1
5d5v_B7e-28121248131Heat shock factor protein 1
5d5v_D7e-28121248131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-138heat stress transcription factor A-2c
SwissprotQ9LUH81e-120HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GL711e-132A0A2G9GL71_9LAMI; Heat shock transcription factor
STRINGcassava4.1_029306m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113