PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100127200101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 334aa    MW: 38220 Da    PI: 6.0553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100127200101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.9e-15204304198
                                   EEEE-..-HH.HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdv.lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkang 73 
                                   f+k+l+ sd+ lk++rl++pk++ae++     g+   ++  ++++d +g+ We+ ++   +++s+ yvl+ G +++  +++
  Ote100127200101|100127200101 204 FEKILSASDAdLKLARLIIPKRCAENFfpdisGL---NGLRIKIQDIDGNDWEFHYRNwlNGGSRIYVLE-GLRDYMVSKQ 280
                                   89999999972466**********888*976544...4668***************77444444448888.********** PP

                                   --TT-EEEEEE-SSSEE..EEEEE- CS
                            B3  74 LkegDfvvFkldgrsefelvvkvfr 98 
                                    + gD+v+F++++  +++ v+++++
  Ote100127200101|100127200101 281 WQPGDTVTFYRVE-PGGKVVMGLRK 304
                                   **********765.66666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-22200313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-17201307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-17202304No hitNo description
SMARTSM010193.3E-14204305IPR003340B3 DNA binding domain
PfamPF023626.8E-12204304IPR003340B3 DNA binding domain
PROSITE profilePS508639.15205306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MXXXXXXXXX SSSSRMLCFQ CQDSCSNPDH FRNGWRLRSG EFAQLCPRCA SAYDDGRFCE  60
TFHSNDDGWR DCESCGKQTV SPLWMYCIFQ YSFALGLWRD NMHGVLKARK QCLSLEPEVR  120
AREPCQESSG QAPVEAQYWP RVTDLELQKV SRKYPFRLHS VEELFTDCYV IVNVDASDSD  180
LSRESFSAST FETTLPKATV TPLFEKILSA SDADLKLARL IIPKRCAENF FPDISGLNGL  240
RIKIQDIDGN DWEFHYRNWL NGGSRIYVLE GLRDYMVSKQ WQPGDTVTFY RVEPGGKVVM  300
GLRKSSGSPQ LPSYCSMFWF LPESRVDIKT AAGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-3319930819127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098358.11e-129B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2G9HK541e-132A0A2G9HK54_9LAMI; Uncharacterized protein
STRINGMigut.H01903.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499