PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100127060051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 311aa    MW: 34930.3 Da    PI: 9.6781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100127060051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31246303359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed ++++itYegeHnh+
  Ote100127060051|100127060051 246 DEYSWRKYGQKPIKGSPHPRGYYKCSSMkGCPARKHVERCLEDSSMLIITYEGEHNHP 303
                                   9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.5E-12198242IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.7E-34233304IPR003657WRKY domain
PROSITE profilePS5081130.079239305IPR003657WRKY domain
SuperFamilySSF1182904.05E-27242303IPR003657WRKY domain
SMARTSM007746.2E-39244304IPR003657WRKY domain
PfamPF031062.2E-27246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEAEKANSE AVESCYRVIN LLSQPQIPDH YRNLAEQTGD AVNKFKKVIS ILNSSRGHAR  60
VRKFKNILPL LSQNIYLENP ITGTNNWHRL VEINSAESNR LQESIKSELT LELSSNARNL  120
TQFSQQTALP NHHQRRNQLH QQAEVMHRCN NSGISLNFDG STSSARSFIS SLSVDASGSN  180
LDGSEFHLIA DEGSRHQKRR CCMRGEDGSV KCGGSRCRCS KKRKNRVKTS IKVPAVSSKL  240
SDIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSMKGCPARK HVERCLEDSS MLIITYEGEH  300
NHPNLPSPSA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212403061075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.11e-137probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-91WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D5Y9951e-152A0A0D5Y995_SALMI; WRKY protein
STRINGevm.model.supercontig_52.1431e-123(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350